Array 1 190524-194765 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRS01000002.1 Neisseria zoodegmatis strain NCTC12229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 190524 32 100.0 35 ................................ AATGGGGAGCAGCCCACGCAAATGGAGCAATTCAG 190591 32 100.0 36 ................................ CTGATTGTCTTTGATGTGGACTTAATCCGGCAAAGG 190659 32 100.0 35 ................................ GGTAATGCGTGTAGCAAACTTGCCTTCTTGTTCCA 190726 32 100.0 35 ................................ ATGTCAACTAATCGAAGCTCGTTTACGCCTGAAAT 190793 32 100.0 34 ................................ CGCTCATATTCTCAATAGGTTGAGATAGGGTTAA 190859 32 100.0 34 ................................ ATTGAAGTACCTGTTTATGACGCATCTGCAAAAG 190925 32 100.0 34 ................................ GACCGCTGGATAGCGGCTGCGCTGTTGAAAGGCG 190991 32 100.0 35 ................................ CCCGCCGCAAAAGATGCAGCAGCGAGCCGACCGTT 191058 32 100.0 33 ................................ GACGGCGTTTTTCGCATGTTTCAGCTTATGGCC 191123 32 100.0 35 ................................ TAAGCTCATTTGAATACCAATGCCACCACCAGCAC 191190 32 100.0 36 ................................ CCGGCAATATTTCAGACGGCCTGTCTTATCCCAAAA 191258 32 100.0 36 ................................ GCAGCGGGGGTAATCCACTGATGGGAAACTTTGCAG 191326 32 100.0 36 ................................ TGTATGGAAACGTCTATTTCGGCGGCCAGCAGGAAA 191394 32 100.0 34 ................................ TTGATATTTTAATAGTGGTTGCTGCTCAGATGTT 191460 32 100.0 35 ................................ CTTTGATGGAAGGATCTTTAAACGGCGGGATAATC 191527 32 100.0 36 ................................ AGTATTTTTGCCACGATAAGTTTATCTTCTTGTGCA 191595 32 96.9 36 G............................... ACGCATCCGCCTACGATGCGCTGGCGGGTGCGGGCA 191663 32 100.0 33 ................................ AATCAGGCTGGCAAGCCGTCTAACCCCCATTTG 191728 32 100.0 36 ................................ TTTGACCATCAACGGCTTACCCGAAAACGGCGAGAC 191796 32 100.0 33 ................................ AGATGTGGGGTCAACTGATAACAGGCGTTTTAA 191861 32 100.0 35 ................................ TGTGCAGCCAATGCCACATATTTATCCGACTTACC 191928 32 100.0 34 ................................ CGCCTTTTGGATTTGCTCGACTTTTTCAGCCAGC 191994 32 100.0 34 ................................ CAAAACATCTTGGTCAGGGTCAATCAGCCGGTTG 192060 32 100.0 34 ................................ AATGATATCCGCCATCTCACACCCCCTTAACCAC 192126 32 100.0 34 ................................ TGCATCTGAAATGACGATAGCTGTTGCATCTGAA 192192 32 100.0 36 ................................ CACCCCACTTGTCCACACTTGACCATACTTTCGGAC 192260 32 100.0 34 ................................ AATTGCCGCTGCACCGTACGCGCGTTTGCAGACA 192326 32 100.0 36 ................................ CACACGATTAATACGAAAATGGCAACCAACGCATAA 192394 32 100.0 34 ................................ AAGACTGGTAACAGCTTTATACCACCAATATTGC 192460 32 100.0 34 ................................ AAGACTGGTAACAGCTTTATACCACCAATATTGC 192526 32 100.0 34 ................................ TATGAATTGGTGTACGTTCAGTTCCAATGCGGTT 192592 32 100.0 34 ................................ CTGCCAATACCGCCGCTCTGCTTCCACATCCACC 192658 32 100.0 35 ................................ AGCATTTCGGCATCGTAGCCCTTGCAAGTGATTTC 192725 32 100.0 34 ................................ AGACGTCCACATACTGGCCGGGATTAGTCATAAC 192791 32 100.0 34 ................................ GATATCAACAGGCGTACCTTGCTGGGTGTAGCAT 192857 32 100.0 35 ................................ CTTTTTACAACAAGCAAGCATAACTTGTATACAAA 192924 32 100.0 35 ................................ CGGGTCTTTGCCCGTGTATTGGCTGGGCGGCGCAT 192991 32 100.0 39 ................................ TTAAAAGCTTGGTATTCGCTGTCTTTTTCCAGCATGGAA 193062 32 100.0 34 ................................ AGGCTTAAGGCTTCGGATGGCACGCCGTCGTCTT 193128 32 100.0 35 ................................ GGGTTGTTTTCCGCCAGCTTTTGCGCCAGCTCTGT 193195 32 100.0 34 ................................ CGTGTCTCCCAGCTCGCAAACGGCCAACGATGTT 193261 32 100.0 36 ................................ CTGAACTTGCCGAATAAGCGAAGCAGATATACGCAT 193329 32 100.0 36 ................................ TCTAATGGAACCATCTTTAGCCGCTAAAGGGTGTCC 193397 32 100.0 34 ................................ TACCGCCCGTTTGTACGGATTGTATATGCCGTTT 193463 32 100.0 34 ................................ TTGAAGTTGTTTTTGGGCTTCACTCGGTTGCTGC 193529 32 100.0 36 ................................ GGATTTAAGGCCGTCAAACAGATGATTTACGGGGGA 193597 32 100.0 35 ................................ AAACGAGGCATTAGAAAGGGCTACAGTTGACGACA 193664 32 100.0 34 ................................ TATTAACAAATCAAGCGTTATATCTACACCCTTA 193730 32 100.0 35 ................................ ATTAGATTTAAACGCCCAAAAAAATAACATCTGAG 193797 32 100.0 36 ................................ AAGCCTGACGGAGTTGAGAAAACTGGCTTAATCAAC 193865 32 100.0 36 ................................ AAAGGCAAGCGACCAGCCCAAAAAATGTTATGCCTT 193933 32 100.0 34 ................................ GAGCAGTAACTTGACATCAGCCACGGTGGCTGAT 193999 32 100.0 34 ................................ TAGTATTGGCGGTGGTATTGGTGCAACATGGGAT 194065 32 100.0 36 ................................ GAGCAAGGCAACGGCACGACGGGATAAGGGTACATC 194133 32 100.0 35 ................................ ACGCTCGGTGTATTCTGCATTTTGGGCAAAAATGG 194200 32 100.0 36 ................................ GTTGGCATTGCTTACGACTGCCCATTTTTGCAAGGC 194268 32 100.0 34 ................................ CCCGCATAACTTGGGTTAATCCCCGGGCCCCAAC 194334 32 100.0 34 ................................ CCATGCTCAGACGTTTGGGCAGTAGATCATGGGC 194400 32 100.0 35 ................................ CGCAACAGCTCGGCCTACGCCTTGAAAGACCAAGC 194467 32 100.0 36 ................................ AGGCCGTAAACAAGAAAGGCCGTCTGAAATTCAGAC 194535 32 100.0 35 ................................ GAAGCGTGGATGTGCCGATTGAATAACGGCGACCG 194602 32 100.0 34 ................................ TAAATCTCAGTTAGAGGGCGTCGAAGATGGCTTT 194668 32 100.0 34 ................................ TACAAAAACAAGCCGGCCAACTTGAAAAAAATCG 194734 32 71.9 0 .........C..A.C.....AATCA......A | ========== ====== ====== ====== ================================ ======================================= ================== 64 32 99.5 35 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : ATAAGGGGAAATAGCGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACGCAGATGGGCAGGCGAGGCTGCGGCGCATAGCCAAACATTGCTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTAAAACTGAAGGCCAAGCTGCTCGACACCTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAATGGCGGCGCAAGGTGGAACATCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAAGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGATGGTTAGCGATGCAGGATTGTTCTTTAACAATCAGGAACTTGAAATATGCGAGTGGAGCAGAATAAGGCTGTGCTATACTCGCTTTTCGCGTTTTCGGAGAGCTTTAGCGAATCAGGGCTGTGCAAGCCTTGATGGATAAAGGTTTCCGAGAAGGCT # Right flank : AATTCAAACTTTACCGTTTTAAATCCCCAAAATAAACAGACGACTTATCTGAGGCCGTCTGAAAAATCATCTATCTCCAAATACCTAAAAATCCAGCTACAAACTAAATGAATTAGCTGAAATATTTTCAGACGGTCTCTCGGCTTTTTTAGTACGTTTGAAAATCCGTATCCTGCTGAAACCAAACAATTTTCCGTGCGTTCACCCAAAGCGGCCATTCGCTGCCGGGGTGTAGGTTGAGGCCGCTGGTTTCGGCGGGGTCGAGGTGGAGTTGTATTTCGCCGTGTTGGGGGTGGATGAGTGTCAGCAGGCTGCGGTCGGGTAGGCGGGTGTGTGCGGTAATTTTGGCGTTTTGTCCTTGCGGGTGGTTGAAGTGGATGGCGTGTTGGGGGATGTAGCGGATGTCGTTGACGTTGGTGGCGCCGATGAGGCGGGCGGCTCGGGCGTCGGCGGGGGTGCTGATGAGGGTTTGGGGCGGGGCGAGCTGGATGATGCTGCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 200546-202137 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRS01000002.1 Neisseria zoodegmatis strain NCTC12229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================================================================================= ================== 200546 31 100.0 41 ............................... AAAACGCCCAAACGTTACCCGAACTACCCGTTCCGCTGCAC 200618 31 100.0 35 ............................... AAAACGTGGTAACGGGCGTAAAAGTCCTGAATCAG 200684 31 100.0 33 ............................... CACGAGTACACGACGGGCGGCTTAATGCCCAGA 200748 31 100.0 35 ............................... CGCCGGAAGGTAGCGGCGGTTGAGGAAAGGCCGTC 200814 31 100.0 35 ............................... ACGGGCGCGTGCTCGCTTGGGTGCCGGCGCAACCG 200880 31 100.0 34 ............................... ATTTGCGCCGCCGTGAAGCCGACCGCATTGCCTG 200945 31 100.0 37 ............................... GCCGCTTAACCATCTCTCAAGCGATGAAACAGTCGCA 201013 31 100.0 35 ............................... TCGCGTGATGGCTGAATTAGATTCCGAATTTGGCA 201079 31 100.0 35 ............................... ATTATATCAGGTTACATTGTAAAAGACTTGGAATT 201145 31 100.0 35 ............................... TCCCAACAAACAATCACGAATCAAATTGTATTGCG 201211 31 100.0 34 ............................... GAAATCATGCTTGGGTTGCAAATTGGCACGTTAT 201276 31 100.0 34 ............................... GAAATCATGCTTGGGTTGCAAATTGGCACGTTAT 201341 31 100.0 34 ............................... GAAATCATGCTTGGGTTGCAAATTGGCACGTTAT 201406 31 100.0 35 ............................... AAGGTCATTGTCGATAAGACGTAGAACATGGTCGG 201472 31 100.0 34 ............................... GGGTAATGGCAAGGGGGATAGTAAGGGTGATGAT 201537 31 100.0 34 ............................... CTCGTATTTGGATTTTGGGCGGCGTTGCCGTTAC 201602 31 93.5 34 ..........CA................... GATAAAATTGCTGCACCAATTGGGCATAACGGTC 201667 31 90.3 34 ....T.....CA................... AATTCCATAGCTTCCTTAGCCGTCATATTCGGGG 201732 31 100.0 35 ............................... ATAAACCTTAACAAGAACATGCTTACCGTCATCAG 201798 31 96.8 12 ..........C.................... CACGGCGTAACG Deletion [201841] 201841 31 74.2 34 G.GTATTT.C..................... CGTGGGTAACGATTGTCGGCATGGCGGTGGCGGT 201906 31 87.1 34 ......GT....G.C................ GTGCCTACGCTGGCCGAAAAACCCGAATCCAAGC C [201917] 201972 31 87.1 103 ......G.....G.C........A....... ATGTACGATGGTTATGTTGAGGCGGGGGAAGAGTTCAAGCTCTTTTGATTGGTTACTGTGTTTTAAAACGATTTGAATCCGTGCCTGCTTCTCAGAGAATGAT C [201983] 202107 30 80.6 0 G.T..........A...T.....A..-.... | T [202115] ========== ====== ====== ====== =============================== ======================================================================================================= ================== 24 31 96.2 37 TCAGCCACCTTGCGTGGCTGTGTGTTGAAAC # Left flank : AAAAACAGCTCGACAACCAAAAAAACGTATCCGTTAAATCGTTTGTATTCGACTCGGGAGCCGTTGCCTATGATTTGCTGGAAAGCAAAATCAACAGCAAACTGGAAGCAGCACTCGGCACGCCCGCCGAAACCGCAACCCAAGCCGCCCAGCCTGCCGCCGGAACAGATTACGCCTATCGAAATACGGCCACGGCCTCCGTATCGGACGATCCCATCGTTCTTATGATTTGATTGCTTGTTAAATAGGCAATTGAGGCCGTCTGAAAATTTTCAGACGGCCTCTTGAGCATATGCTACTTATTTGTTTGGGCGGAATAACAAATCAGCGCCAACCCGCAGCAAACATACGAAAGCTGCAAGGTTGGCGAAATTTTTTACTCAGATATTCAAGCGATTAAAACCAAGCCGCTGTGATATAGTCTGCTCTGGCATCTTTTTGAACCGTTTGGCGAAAATCGGGATTTAGGTGATTGTCGGATAACGGTTTGAGAAGAGGCT # Right flank : CCATCCCTCCAACATAAGAGGCCGTCTGAAAACTGCTTTCAGACGGCCTCTTATCATTTCAAATGCCTTAAATGCGTTTTGCCAGTTCTTCGGCTTTGCCCACATACAGCGCGGGTGTTAAAGCCAGCAGCTGCTGTTTGGCATCGGCGGGAATGTCCAGCGATTCGACAAATACTTTCAGCACTTCGGGCGTGATGCCGTCTTTGCCGCGGGTGAGGTCTTTCAGTTTTTCATACGGATTGGCCACACCGTAGCGGCGCATCACGGTTTGAATCGGTTCGGCCAAGAGTTCCCAAGTAGCGTCCAAGTCGGCGGCTAAAGCGGCGGGGTTGGCTTCCAGTTTGTTCAGGCCGCGCAGGTGGGCGACCAAGCCCAGTACGGTGTAGCCTGCGCCTACGCCCATGTTGCGCAGCACGGTGCTGTCGGTGAGGTCGCGCTGCCAGCGGGAAACGGGCAGTTTTTCCGAAAGGAAGCCCAACACGGCGTTGGCCATGCCCAAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTGCGTGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCACCTGGCGTGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //