Array 1 92770-93041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYO010000107.1 Acidithiobacillus sp. VAN18-1 Contig107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92770 28 100.0 33 ............................ TATTTAATGCTTGCATTTAGTATGACCGTGATA 92831 28 100.0 33 ............................ TGACAAATCCTACAAAGAGCTATCACAAAAAGG 92892 28 100.0 33 ............................ CGGTCGGGGGTGGCCATCGAGTACCGCCAGCGC 92953 28 100.0 33 ............................ TAGCTTTCCGCTAGTCTCGTGCGCTAAAGTTTT 93014 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : CTACAAGGCTGATCTGTGCATTGATTTAGCCTTTCATCTCACCCGCGAATTGGCGGGTCGGTATGACAAACACAAAGTGGCCGCCGCATTTCGCCAGCGCGTGATTGAACTAGATTTGCTAGCCAAATTGGGCGAAGACATTGCCACAATGCTTGGAGGTGCTCATGCTCGTCGTCCTCGCCAATGATCTACCCCCGGCCGTGCGCGGTCGCATGAAGCTGTGGTTCGTTGAACCACGGCCCAATGTGTTCGTCTCGGGCGTGAAAGACTCGGTGGCCGTAACCGTGGTCGACTATCTCTATAAGCATTGCCAGCCCGAATCTGGCCTGCTGATCGTGCGCACGATCAAGCAGACACCTGGCTTCGAGATGCGCTGCATCGGCCCGCCACGCAAGCCGATGATCGAGGTGTCGGGTCTGCAACTGATTGTGGAAACCCTGAAACTCTAGCTAACCAGCATATCTTGTGCTGGTGCTCGTTAAGGGTACTAATATGTTGGT # Right flank : CAATCCGGCCCTGGGAAGATTCATCTTGGATACGTCTTCCCCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97-2075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYO010000123.1 Acidithiobacillus sp. VAN18-1 Contig123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 97 28 100.0 33 ............................ TAAGGACTAGCAATATATAAAGGGTTAGCTTCA 158 28 100.0 33 ............................ CTATACGATTCCCATAGGCGACCATCCGGCGTT 219 28 100.0 33 ............................ CACCCAGAGGGCGATTCAGGAATCGCTGGAAGC 280 28 100.0 33 ............................ TCAGTATCGCCGTATAGGACGTTAGCAGGGCCT 341 28 100.0 33 ............................ TGATTTTGTTGATTCGTGCGAGCAAATACGAAA 402 28 100.0 33 ............................ TAAAGGATCGTGTTAAAACATCCCCTTCTAAGT 463 28 100.0 33 ............................ CATCAATGCGTACTACTCCGTCCATATCAAAAC 524 28 100.0 33 ............................ CGAGGCCCGTGGATGGCTCAGTCCATGCAGTAC 585 28 100.0 33 ............................ TCTATACGCGGCTGGGCAGGCCGCAGTAAACCG 646 28 100.0 33 ............................ TAAAACCACCGCCCGGGCCGTATGTATTTATTG 707 28 100.0 33 ............................ CGAAGCAGGGACCTTGTTATATGGCCGGAATTT 768 28 100.0 33 ............................ TGAATCTGCCCTTGGTGGTAATCGGCGCTTTCA 829 28 100.0 33 ............................ TGGGGTCGCAAGTGTGTTTATTGCGATGCGGAG 890 28 100.0 33 ............................ TGATGGAAAAGGTGGGCGGATTAACGGCAGGAA 951 28 100.0 33 ............................ TTGGAAAAGCAATGGGCCACATTCCGCGCATTA 1012 28 100.0 33 ............................ TGCGCTATGAGCCGGGCTGGCATACGCGCAACA 1073 28 100.0 32 ............................ GCCGCGCATATCTCATATGCTATGGAGGACGC 1133 28 100.0 33 ............................ CGGTTCTCAGGTGACAAGCGATAACCTCGCCGT 1194 28 100.0 33 ............................ TTTCAAAGTCCCCGCTGGTTACCGCTGGACCGC 1255 28 100.0 33 ............................ TTGCTTACGGGGTGTATATTAACGGGGTGGAAG 1316 28 100.0 33 ............................ TCAGACCGCGAATCTAGCGGCGGCCATAGCCGC 1377 28 100.0 33 ............................ TGGCTCCAGACGCTGGATTTATTGCGTACGGAT 1438 28 100.0 33 ............................ TGTTCAGATTAGTCCAAACCTTGCGGCCAGTGT 1499 28 100.0 33 ............................ TGGATAGGCGTCTAGGAATGAGGCCATCATTAG 1560 28 100.0 33 ............................ TGGGTGGGAACCACTTGAGGGGGTTGCCTGTAG 1621 28 100.0 33 ............................ TAAGATCATCCAGCCGCTTCTCAAACTCCTTCA 1682 28 100.0 33 ............................ CGCGGGTAAGTTTTGCGGCTGGCTTGGCTGATG 1743 28 100.0 33 ............................ TCTTTGCCGATACAACTTTGATCTCCGGTTCCA 1804 28 100.0 33 ............................ TAGATAGGCTCATTGTAAATAGCTCCCCACGGC 1865 28 100.0 33 ............................ CGATCTTTGTTGCAAGTCGCAAAAGACCCCGAG 1926 28 100.0 33 ............................ TCTGCTGCAATTGGTGTTGGTACTGCTCTTGTG 1987 28 100.0 33 ............................ TGAAGCAGCTTAAATATTTGGTCATGTTAGACG 2048 28 92.9 0 ..........................CG | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : GAACTCTTACCCTACCACTGGGGAAAACAACCCATCGTAACGTAATACCTAGCCTTGGGTAGGTGGGTTGCTTATACGCTTACGAACTATCGACGTG # Right flank : GTAACAGATTATGCGTATTCCGGTCGCATCCGGCCACTGATTCCACGATGATCCGGCCACCGATTCCATGAACATTCGGCCACTCGTTCCACGGGCATCCGGCCACTGATTCCACGGCCATTCGGCCACCCCTGGGGCAGGAGCTACGTTGGGTAGTTTTGTTCATCATGACCTCTTTTGCGGAGCAGGGAGGTTTTTGTGGAGCGACTATCCATGCGCAAGATTCGAGAAGTATTGCGATTGAAGTACGAGGCGGGACTGTCCGCCAGAGCGATCGCCCGCAGCGTCAACGCCGGCAGGACAACGGTGCAGGAGTACCTTCAGCGTTTTGCGGCGAGCGGTATTCCCTGGCCCACGGAGCTGGATGATGCTGCTTTGGAAAGCCGATTGTTCCCTCCGCCACCACCGGCTGGCACGGAGCGACCAGAACCGGACTGGACGGTTGTCCAACGCGAGCTGCGGCGCAAGGGGGTCACCCTGTTGCTCCTCTGGGGGGATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4585-5344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYO010000123.1 Acidithiobacillus sp. VAN18-1 Contig123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4585 28 100.0 33 ............................ TATTACCGCCTTGTTGAAGACCTCGCATGGTCA 4646 28 100.0 33 ............................ TAACCGGAGATAGCAGCACCGATAAAAAAAACA 4707 28 100.0 33 ............................ CGAACTACGGCATTACCCAGTCCACCTACGACC 4768 28 100.0 33 ............................ TAGCACAAGGACGGAAAATTGCAAAGAATGAAT 4829 28 100.0 33 ............................ TATTGGTTCCGCTATTCTTTCTGATGTTGGCCT 4890 28 100.0 33 ............................ TAGTCGCGCCCTTTCTTTGTCTATGGTACAACC 4951 28 100.0 33 ............................ CATTGCGTCCTACCAAGGCAAACCACGCCGTAC 5012 28 100.0 33 ............................ TTGACGCGGGCATGTCTCGAATGTGCTGATGGC 5073 28 100.0 33 ............................ TCCGCGCTAGCCCCGCCACTGGTCGGGTACAGA 5134 28 100.0 33 ............................ CCGTTATGGCATCATTCCCGGCTGTGCCTTGTG 5195 28 100.0 33 ............................ TAACGGCGACGGGGCAGAACGCGGTACAGAATC 5256 28 100.0 33 ............................ TGGGAATGAGTAGCCCGATTTTTACTCAGCCAA 5317 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TCCGATCTCGAAATCGCCCATGCGGACGGCCGCTATCCCAAGCTCCTTCAACGCTTGTCCAAGATCGACCTGCTCATCCTCGACGACTGGGGGCTGGAAATCCTGACCGATCGGAGTCGGCATGACCTCCTGGAGATCCTGGATGACCGCTACCAAACCGGTTCTACCCTGGTCACCAGTCAATTACCCGTCGAGCACTGGCATGACAGCATTGGCGATCCCACCTTGGCGGACGCCATTCTGGACCGCCTGATCCACAATGCCTACAGACTGACTATCGACGGAGAATCCATGCGGAAGAAGCAGCGGTTGACCCCAACGGCGCAGTCGGCGTAACGTCCTTTTACCCGCGTCGCTACGCTCCGCCTGCCCCGGCCGAATGGCCGGGGACAGGGTGGCCGGATCATCGTGGAATCAGTGGTCGGATGCCGATGAATTGAGTGGCCGAATGGCATGGAATACGCATCCAGCGTAGCGTAAACTGTCGCGCCGCTTGTTGT # Right flank : CCGTAATCATGACGGCCAAGATGGAGCGTATTAAGTCTTCCCCGTATCAGCGGCCACCACTATGGCGCCATTTCAGGGTCGGCATAATGGCGCCACCCGCACTGCCTGAATCAGGGTCTCGAACATCCATTGGATCGGTTACCGTCCTCAGCTTTCGAGGATGTGACCATGAGCAACAGGAGGTTCGAGATGTTTACCATTCGTCAGATATTGGTACGGATGCGCCAGGGGGACACTGACCGGGAGATTGCCCGGTCTGGCCTCATGGGCCGCAAGAAGCTGGGTGCTCTGCGTCGTGACGTTGCCCAGCGGGGTTGGCTCGATGCCCATCAGCCACTGCCAGAAGATTCGGAGCTGGCGGCCGCGCTGCAGCATCAGGCACAGCCTGCGTCAACGCAGCGTGAGTCTTCCTTGAAGCCCTTTGAAGCCCAGATCACTCGGTGGGCGGCGGAAGGCATCCAGGGCACCACCATTCACGCCGCATTGGTCCGCAATCATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //