Array 1 165548-163383 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBS01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2718 NODE_5_length_407373_cov_4.16104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165547 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 165486 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 165425 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 165364 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 165303 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 165242 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 165181 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 165120 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 165059 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 164998 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 164937 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 164876 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 164815 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 164754 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 164693 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 164632 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 164571 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 164510 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 164449 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 164388 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 164327 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 164266 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 164205 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 164144 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 164083 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 164022 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 163961 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 163900 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 163839 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 163778 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 163717 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 163656 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 163595 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 163534 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 163473 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 163412 29 100.0 0 ............................. | A [163385] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185100-183180 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBS01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2718 NODE_5_length_407373_cov_4.16104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185099 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 185038 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 184977 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 184916 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 184854 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 184793 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 184732 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 184671 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 184610 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 184549 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 184488 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 184427 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 184366 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 184305 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 184244 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 184183 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 184122 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 184061 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 184000 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 183939 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 183878 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 183817 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 183756 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 183695 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 183634 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 183573 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 183512 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 183451 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 183390 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 183329 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 183268 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 183207 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.5 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //