Array 1 740739-743215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHIS010000001.1 Clostridium perfringens strain 4928STDY7387889, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 740739 36 86.1 30 A...C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [740741,740751] 740807 36 100.0 30 .................................... AAATTTGAAGGACAAAACATAACATTTAGA 740873 36 100.0 29 .................................... TTTTTTCTTTATAAGCTGCGTATCCTTGC 740938 36 100.0 30 .................................... GACGCTGCTAAAATCAATGTAGTTAATCTT 741004 36 100.0 29 .................................... CTAATACAGCAGATAGAATAGAAAATAGA 741069 36 100.0 30 .................................... CTGAGTTTATAGCATTCGTAACTGAATAAG 741135 36 100.0 30 .................................... CCTTTGTGTTCTCCTATTGCATAGCAAGGA 741201 36 100.0 30 .................................... AAATTAAGGAGCAACGCCAAACGCTAAACA 741267 36 100.0 30 .................................... AAAGATAAGACAATTAGAGTTAATATAAGG 741333 36 100.0 30 .................................... GGTAAAAATGAACTTAATGAGTTTTTCATA 741399 36 100.0 30 .................................... TTAAAGGAAACTACTAGAGGTGCTAGTACT 741465 36 100.0 30 .................................... ACAGAAATTATATTAAGAGTAAGAGGTAAT 741531 36 100.0 30 .................................... CATATCTTAAGAAAGAAACTTATAAATGAC 741597 36 100.0 30 .................................... TGGAATTCAGATTTCAATTTAGATGAAGTT 741663 36 100.0 30 .................................... AATGTAGATCCAGCCTTATTAAATGGAAAT 741729 36 100.0 30 .................................... TATCCTCCCATATATCTCTCTAATGAAAAT 741795 36 100.0 30 .................................... TCATTTGGTTTAGGGGTATATGATAACTTA 741861 36 100.0 30 .................................... GAATTAAAAGAGAATAATGCTACATTCTTC 741927 36 100.0 30 .................................... AATAGGTTAGAAGGTTTAAGACTTAGAAGA 741993 36 100.0 30 .................................... TTTAGTTATGCACATGATGTTGCAGGAGCA 742059 36 100.0 30 .................................... TAAAGTATTACGGCAGTGACCGTCCTGTAA 742125 36 100.0 30 .................................... GCTCTTATAGTAGGATATAAAATAGATGAT 742191 36 100.0 30 .................................... GCTCTTATAGTAGGATATAAAATAGATGAT 742257 36 100.0 30 .................................... GCAATGGTAGCATTATGTCAACTTTCAAGG 742323 36 100.0 30 .................................... GACGCTATAGATTTATTTGATGAGGAAGAG 742389 36 100.0 30 .................................... AATATGGATAACAAGCTATATTGTTCTATT 742455 36 100.0 30 .................................... TAAAGAACCACAACAGATATATAATCAATT 742521 36 100.0 30 .................................... TGCTAAAGCAAATGAATGATAGTTCAGGTG 742587 36 100.0 30 .................................... GTTTACAGTGTGGGAGATTATTCAAGGGAT 742653 36 100.0 30 .................................... GAAACAGAATAACGCTCCTATCATTTTATC 742719 36 100.0 29 .................................... TTATGGTACTATTAGAAGAGAAATAAATC 742784 36 100.0 30 .................................... TTTCCTTTAGAAGTAGAAACTGGAGAACTA 742850 36 100.0 30 .................................... AAGAGAGAATTTAGATAAATTCATAGATAT 742916 36 100.0 30 .................................... AAACTACCAACTGACCAATTAGTTGGGGGG 742982 36 100.0 30 .................................... AAATTAGCATTATTATCTACTGCTGAAATT 743048 36 100.0 30 .................................... TCCCATTCTAGTTCTAGGAAAGGTTTTAAA 743114 36 100.0 30 .................................... GCTAAGGCAATGCTTCAAATGATGGGGGTA 743180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 99.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAACACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //