Array 1 1002635-1003822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030196.1 Salmonella enterica strain SA20051401 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1002635 29 100.0 32 ............................. GCTTAGCCGATCCTGATGACCCGGCCAGAAAG 1002696 29 96.6 32 ............................C GTTGCTCAAAAAACTGAACGAGGGTAACTACC 1002757 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 1002818 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 1002879 29 100.0 32 ............................. GTATTCAGCTCTTGCCGCAATATGCCGCTCAA 1002940 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1003001 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1003062 29 100.0 32 ............................. GTCCGTCAGGTTGGATCGGATGGCATTCCGGT 1003123 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 1003184 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1003245 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1003307 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1003368 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1003429 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1003490 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1003551 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1003612 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1003673 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1003734 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1003795 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAGCTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1020577-1021765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030196.1 Salmonella enterica strain SA20051401 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1020577 29 100.0 32 ............................. TTGGCGTCGCTGCGTACTGGTTAACGTGGTAA 1020638 29 100.0 32 ............................. ACGCAATCTGAATATTTGCCCCATTGCCTTCA 1020699 29 100.0 32 ............................. AACTATCAGAAGATCGCGCAGAACTGGCGTAA 1020760 29 100.0 32 ............................. AGTACCCAACATCTGGAACATTTTCCCGCACT 1020821 29 100.0 32 ............................. GGATCTGTATCCCCTGCAATAGCGGTCACATG 1020882 29 100.0 32 ............................. TCCGGTCAGGGGAACAGCATAACAATTCCGTG 1020943 29 100.0 32 ............................. GAACTGACGGGTAAAGCGGCGGTATTCGGTGA 1021004 29 100.0 32 ............................. ATGTATGCGACTGACCTGGGGTTGCCGACGTT 1021065 29 100.0 32 ............................. GTATTGCGCTGTCGGCGCAGGAATACCGCGAT 1021126 29 100.0 32 ............................. CTGGTCTGGTGTGGCGCGACGGACGCGGCGAG 1021187 29 100.0 32 ............................. GAGATTTAAATGATCCACACAATTACGTTAAA 1021248 29 100.0 32 ............................. CTCACCCGATTAAACAAGAGGAGCGCGGAAAT 1021309 29 100.0 32 ............................. TTTTCATCAATACCAAGTTGGGCCATTTTCCT 1021370 29 100.0 32 ............................. GTTTCACCAGGTAGAGTTGCCACCGCTGCCGG 1021431 29 100.0 32 ............................. TGAAACGTGGCCCCGTGTGTGTTTTGGTTCGT 1021492 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGTG 1021553 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 1021614 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 1021675 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 1021736 29 96.6 0 ............T................ | A [1021763] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAGGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGTATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //