Array 1 38878-40525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDA01000005.1 Shewanella algae strain YTH scaffold00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38878 28 100.0 32 ............................ ACACCGAAAGTCAGGAGCTGATTCGGGTTAGT 38938 28 100.0 32 ............................ TAATGCGCCGCCTGATGATAGTCACCACAGCC 38998 28 100.0 32 ............................ TTCAACAATATACGTTCCTGTTGACGTGGTAA 39058 28 100.0 32 ............................ TGAACCAGTTCAATGCTCCAGCCGCTGTTGGC 39118 28 100.0 32 ............................ TGTTATCGAATACTGTTTATCTCCTTTGTCGA 39178 28 100.0 32 ............................ TGGCTGCTGAGGTATAGCTGTTAGAGGCCCAT 39238 28 100.0 32 ............................ TTTTTGCTCAAACTCCAGGAACAGATTGAGCA 39298 28 100.0 32 ............................ TGACTGAGCGCATCGCCACGCATAATAGGCTT 39358 28 100.0 32 ............................ CATTCACCGCCGGCAGAATGGCGCTACCGAAG 39418 28 100.0 32 ............................ TTGCTATACCGAAGAAATTGACGACGTTATCG 39478 28 100.0 32 ............................ TTGGTAAGGTGATGCCCCTCATCCATCATCCA 39538 28 100.0 32 ............................ GGGTCGTGAATGGGAAGGAAAAATCCAACACT 39598 28 100.0 32 ............................ ATCAAAAACAAACCAGGGCAAACAATAGTTAC 39658 28 100.0 32 ............................ ATAGAGCGCAAATAACAGGGAAACGGCGCTAA 39718 28 100.0 32 ............................ TACCGGAGAAAATGTCACGGCAATAAATGATT 39778 28 100.0 32 ............................ AATAAGCAAATCCGGAAAAACAGGATCTCCAA 39838 28 100.0 32 ............................ TTACGGTAGCGACGAGTCCAGAGAGATCAAGG 39898 28 100.0 32 ............................ TTATGAACAACGCCTTGTTTATGACCCGACCC 39958 28 100.0 32 ............................ GCCAAGGCGCCGCGCGAAAACCCGCAGCGGTT 40018 28 100.0 32 ............................ ATCCTGTCTTATTAATCATTAATCGACTATCT 40078 28 100.0 32 ............................ TCTTGTTCCAGAGAATCGTTTGCAGAGGCGCT 40138 28 100.0 32 ............................ AGTACAATGGGGCTGGCCAGAATGTTGAAGAT 40198 28 100.0 32 ............................ GGCAACGGTCAGCACCTGGCACTGGCCTCGAT 40258 28 96.4 32 .............A.............. ATCTGCAACCGGCCTACGGCGGTAAGAGACAA 40318 28 100.0 32 ............................ TTTAGCCGTATTCCCAACGCTGTCCATGTTGT 40378 28 96.4 32 .......A.................... ATTCAAAGGCACTGCGCCCGCGGTATACCCTA 40438 28 100.0 32 ............................ TAGAATAGCGAGAACCGTTAGAAACGTGTTTG 40498 28 89.3 0 .........T..T........G...... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.4 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCGGCAAAGTACACCTGTGGATGGGCTGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGCACCAAAGGATGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGGTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGGATTTATCACTCGGCCCCAGCAGTATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTTTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGTGGCATCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGAGAGCGAATAAGCGGGGCCGAGTTGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //