Array 1 39868-37455 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGJ01000006.1 Limosilactobacillus fermentum strain 311 NODE_6_length_68821_cov_134.273386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39867 36 100.0 30 .................................... GATCTTCCTGCAACGGTTTACGCGGCAGCA 39801 36 100.0 30 .................................... CTACTGCTACCAAGAATGCAGTCATCATCA 39735 36 100.0 30 .................................... AAGAATTGAAGAATCAAAAGGACTTCACCG 39669 36 100.0 30 .................................... TCGATCGCCTGACTATTGACTTTCGACTTT 39603 36 100.0 30 .................................... CAAATAATTTTGCCGCAGCTAAATGGATTT 39537 36 100.0 30 .................................... ATGCGATGCGGTGGGCTTTGTTTTGCGTAA 39471 36 100.0 30 .................................... AAGTTTGATTTCTTTGAAACAGACTACGCT 39405 36 100.0 30 .................................... TAGTGCCATGTACTGAGTTTTAATCCGCTG 39339 36 100.0 30 .................................... GAGTCTGTGCATCAACCGAAGCCCCGTCCG 39273 36 100.0 30 .................................... CCCGATTGAATCAACCATTCCAAAATATCA 39207 36 100.0 31 .................................... TCATCGTTCTCTTGCTTGGCAACCCACTCGT 39140 36 100.0 30 .................................... TCCTAAAAAGGTAATTCTTTATATGTTGTT 39074 36 100.0 30 .................................... AAGACGTTGCCGAAGGTGGGGCCATCTCAT 39008 36 100.0 30 .................................... ACGCCGTCTTTACCGTCTTTACCTGCTTCG 38942 36 100.0 30 .................................... CTGAGGCTGATTAAACTGGTTGCCTTGTGG 38876 36 100.0 30 .................................... ATGAGCCGGGCCAAGAGTGCGTGGGACGTT 38810 36 100.0 30 .................................... ATTGACGCACTGGCTGAAGCATAGTTTAGA 38744 36 100.0 30 .................................... TTGCCGACCGAATGGAAAACCGTCATGATC 38678 36 100.0 30 .................................... CAGGCCAGATGCCGTTCGTACCGTTCGGTC 38612 36 100.0 30 .................................... CTGTTCAGCTTTGATAGGATATATCCTTCT 38546 36 100.0 31 .................................... CAAGGAGAGTAAGGCAAGCCGCCAAGCAAGG 38479 36 100.0 30 .................................... TATGACAAGATCTTAGCCCACAAAGCACCG 38413 36 100.0 30 .................................... CCTAAAAATGCTGAAGTATAGCTTTCTTTA 38347 36 100.0 30 .................................... AATGAAGTTCACGCTATCCACGGTGGAAAG 38281 36 100.0 30 .................................... TTTCTCTTGGATTCCTCTCCATATCTGATC 38215 36 100.0 30 .................................... CGGTCGAAGCTAAGCCTTGCCACGCCGATT 38149 36 100.0 30 .................................... TTAAGATTTGATGCTTCTTCAAACCAGACA 38083 36 100.0 30 .................................... TTTCTCTTGGATTCCTCTCCATATCTGATC 38017 36 100.0 30 .................................... CTAAACAGGCTAAACACAGTGACCAGGTTA 37951 36 100.0 30 .................................... AGATAAACCGCTAACTGAGTTCTGTAAGTC 37885 36 100.0 30 .................................... CACCAAAAGCAGCCTATCAGAGTGGGGCGG 37819 36 100.0 30 .................................... CCGCTGGAGCAACCATTAGTGTAATCGGTG 37753 36 100.0 30 .................................... CAGGGTTGGACGTATCCTATATGCTTAATT 37687 36 100.0 30 .................................... AACTCAAATCTCACCGCGTCCTCCTACCAT 37621 36 97.2 30 .................................C.. TAGGACAAGGACACGGTTATGCCAATGGTG 37555 36 97.2 30 .................................C.. ACACTGTGGGTATGAACAAGTGTTAGACTA 37489 35 86.1 0 ...........................-.TT..A.T | ========== ====== ====== ====== ==================================== =============================== ================== 37 36 99.5 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGCTACCAAACAGCACTTGATAAGATGATTGTCAAAAATCTTAGCATTCAGAAACGAGATCGGATGAATGACCTTGCTCGTGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGTGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGATCGTTAGTTTTTGATGAGAAAATAACG # Right flank : TATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAGAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAAGACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGTTGGCCATTTTCCGAGCCAAGCAAGTCGCGACTAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCCTAGAAAGCGCCGAAAATACATTGGTTTATGCTGAACAATTGGTGGCAGACGGGCGGTCCGTGATGGTGGCGCCGGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 6734-8852 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGJ01000050.1 Limosilactobacillus fermentum strain 311 NODE_50_length_9075_cov_180.706527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 6734 35 100.0 33 ................................... TCAATCGGGGCGTTGGGGGCCAGCAGTTCAGTC 6802 35 100.0 35 ................................... AATTGTTGTCGTGCCGTTGAAAGTGTTGTCTCCAG 6872 35 100.0 35 ................................... GCTAGTTCGCTAGGCGGTTTCTTGTGCGACCTGCC 6942 35 100.0 33 ................................... AAATTATTAAAGTCGTCTGTTCCAACCTTAGAC 7010 35 100.0 33 ................................... ATAAAAGCTCGGAACCGTGCGCCATTGGTTGAA 7078 35 100.0 33 ................................... GCTTGGAATACCAATTAAAGATTATAAAGGCAA 7146 35 100.0 35 ................................... ACTACCGACCAACAGCTTAAGATGATCGAACAGTA 7216 35 100.0 34 ................................... AAGAGCCAAGATGTGTTCGACCAGGCAAACCCAA 7285 35 100.0 36 ................................... GTCTAGAATCGTATCAGCTTTTAGCAAAGCAGGGAC 7356 35 100.0 34 ................................... GATTCTTCGGCAAACCATCAAGACTACGACTTAG 7425 35 100.0 35 ................................... AGACGGTTACATGATCCACATAATCTGGCTTCTGA 7495 35 100.0 33 ................................... ATATAAATTAATCTCTGGCGGTAACGCACTACC 7563 35 100.0 33 ................................... GCCTCCGCTACACCGCTGTCAAACATCGCCTTA 7631 35 100.0 35 ................................... GCTGCATTGACACAAGAATAAGGAGAGATAAACAA 7701 35 100.0 33 ................................... TAAGCACGTCGCCTAACTTACTAAGCGCTTTGC 7769 35 100.0 35 ................................... AAAAAAAGGCGATTACAAACACGTGGATCAAAAAG 7839 35 100.0 35 ................................... TGCTCATCTCGTTGTTATAAACTTCGCTTTGACCG 7909 35 100.0 35 ................................... AGCTTGTCAGCGATTCGGCTAGCTAACTTGGCCAT 7979 35 100.0 34 ................................... GGGTTGCCGTAGTGAGTTGGTTGTATGAGATGGC 8048 35 100.0 34 ................................... TGGTGGTAAGAGTAACACCGTACCTAAGCTCAAA 8117 35 100.0 38 ................................... ACCACCCGCGTTCTGGAGATTAGTGTCCCGGTAGTAAA 8190 35 100.0 33 ................................... GTTAGGTGTGGCTGGGCTTACTAATACGCAAGG 8258 35 100.0 35 ................................... CGTTTCAACTTGCTCACGAAATTTCACACATCTTG 8328 35 100.0 34 ................................... AATGCAAGAAGCGATCGATGAGATCAAAGAAAAC 8397 35 100.0 36 ................................... GATATTTTGCTGCGTCTGAGCGGCGATCAGGTAGAC 8468 35 100.0 36 ................................... TCTGGGGCGCAAGAGGAAGCACTTACCATGTTGCAA 8539 35 100.0 35 ................................... TAGCCAGACGCTTACCAATGCGCAAGGTGATATAT 8609 35 100.0 36 ................................... TCTGGGGCGCAAGAGGAAGCACTTACCATGTTGCAA 8680 35 100.0 33 ................................... TTAGCAGTTCAAGAATTAACAAGGCGAATTAAA 8748 35 100.0 35 ................................... TTTTCGTCGTTTCTTGGATCGTGGAAATGTTACCA 8818 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 31 35 100.0 34 GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAT # Left flank : CGAGGCGATTTGGATGAATATCCACCTTTTCTCTGGAAGTAGGTGCTTTAAATGTTGGTAATTGTTAGTTATGATGTAAATACAGAAGACCCAGCTGGGAGAAGACGATTGCGTCACGTGGCAAAGATTTGTAAGGATTACGGTCAACGGATTCAAAAGTCAGTATTTGAATGTAATGTTGATTCCACTAAGCTTACTGTCTTAAAGCAACGTCTTCTAGCGGAATATGATGAAGATACAGATAGCCTATGTTTCTTTAATCTAGGTAACAAATATCAGAATAAGGTAAGCCACTATGGTTCTAATTCGGTGGTAAACTTAGATGAACCGGTAATATTCTAGTATTATCAGTAGTGCGAACCTAAAGTGAACATAAATTCTTTAAGGATTCGCACCAGAATTTTGGTGATTTTATTCAAAAATCACACTAACAGTTGGTTTTTCAGCTGTTTGACACCCAATATGTAAAAGATGGAGTTCTCTATTTGCTATATGTTGCG # Right flank : AATCTAGACCATGTGTACCTAGTAGGGTCAGAAGAAGTCGCACTCCTTCGCGAATGTGGCTATTGATGATCATTTTATCCATAATTGGCGATTCATCCCCCACTTCGACAAGTGGGGGATGAATCGCCTCCTTAAAGCACGATAGTGCTTTTTCTTTTGCGCTATGGTATATTTAGTATATGTTAAAGGATCGTGGTGATAACAATAGAATTAGATAGAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //