Array 1 2095-1045 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUKJ01000086.1 Crenothrix polyspora isolate RSM_CP2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2094 28 100.0 32 ............................ TTCTCCTCCGGAAATATTGACATTGTAATTGC 2034 28 100.0 32 ............................ AGAAATAGGGACTACAGGCGAATACTCAGGCA 1974 28 100.0 32 ............................ AGTCAAGTGCGCTCATATTTATATCATCCAAT 1914 28 100.0 32 ............................ ATGCCTACATCTGTTGCAACTGCGTTTACTGA 1854 28 100.0 32 ............................ GCTACGCGGCTTAAAAGCAAAAACACTTAAAA 1794 28 100.0 32 ............................ GCCAGAGCCGTGAATTCTAGCACCTTTGGGAT 1734 28 100.0 32 ............................ TACGCAAACCCATGTAATGGCGTTCGTTGGTG 1674 28 100.0 32 ............................ ACTTGATGGCCACTTTTTTTGAGGTTGACCGA 1614 28 100.0 32 ............................ TGTATATCGAACCCAATATTCGACCAGGACGG 1554 28 100.0 32 ............................ ATGTATGACCAAACGCACTCCAAGACCATGTT 1494 28 100.0 32 ............................ GATATGCCCATTGATGGCCTGCCGGTTTTGCA 1434 28 100.0 33 ............................ TTGCCGCATCATCACAGTTAGATGATGACATTT 1373 28 100.0 32 ............................ TAAAAACGGGCCGGTCGACATGGCACAAGGGG 1313 28 100.0 32 ............................ TAGTGAAAGGCAACACGACTTATGTTGACGTG 1253 28 100.0 32 ............................ AGAACCGTAACGAGCAATCCCATAAGCTGCAC 1193 28 100.0 33 ............................ AGGTGCGACTTTAACTTGTAGTGATGCTGGTGT 1132 28 100.0 32 ............................ AGCCCAAATCCACCCACACGAGGGCAGTTTCC 1072 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGTCGCCACCCCTAAAAATGCACATTAGCAAGTTGCTCAAGTTATTTCATGCACGTTACTTAGAAAGACACAGTAGAAGCAAGTCTAACAACAATCA # Right flank : TATTTTGTGATGCGCATTTGCCGCCTGGCATACGTTGGTGCGGTTCAGAATGCCGCGATGACTGGCAAAAAGAGCAGGAGCGTTAACTGCCTGTGTTTTATTTTAAGCCCCTTAGCAGGGGCTTTTTAGTGTAATACAGCCCCAAAACCAGCAATATTTATTTTTTCAGCAAGGTGTTTAACCAGCGGTGGTTATGCTATAGTTTTTCTGTATTATCCTTATGAATAAATGCTTAGGTGGTTGTCATGCACACAATAGAACTGGTAAATAGAGACATTGAATTCCTAACCATTGAAAAGTTTATGTCTTTGACTGCAAAAGAAAAAAGCAAAATTCAATCTGTTAAGATAATTCCTCCTAGCCTTGACCGCGATGACTTTGGCAAAATACAGGTGAAATATAAAGTCCCCTCTTATAGAGTTGCTGGAATTAGCTGATGCCAAATCAGGAATTACAAAATAATTCCAATGAAGCTATCCCAGATGGTTTAACGCCCGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9136-7850 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUKJ01000045.1 Crenothrix polyspora isolate RSM_CP2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 9135 36 100.0 32 .................................... TGAATGGAGGAAATAGCTCGGTAGGACGTGTC 9067 36 100.0 33 .................................... CAGTAACACACCAGTAAACATCGGTCTATATGA 8998 36 100.0 32 .................................... TGTTACGAAGTTTGATTAAACGTTGAGGCGTT 8930 36 100.0 34 .................................... GCGTTGCGAAGTCTGAACCTGGCTTGCTGTTAAT 8860 36 100.0 34 .................................... TATTACTACCGGAGAAACTGCACCAGACTCTAGT 8790 36 100.0 34 .................................... TTTATCTTGCGTGTACTCGCTACCAGTAACATAG 8720 36 100.0 33 .................................... GGTTAGGCTACCGAATTGGTTTCCGATTAATGA 8651 36 100.0 33 .................................... GCTCGAAAGCCAACGCAATTTAAGGCTGTTTTT 8582 36 100.0 34 .................................... TGCGAGGTGAAATAGGTCTTACCGTACGCGTTTA 8512 36 100.0 34 .................................... GATTACAGTATCACCATACAGGTCGGCACTAACT 8442 36 100.0 33 .................................... ATAGCTCTGCCAATAACGCGTCGCGATCGTCGT 8373 36 100.0 34 .................................... TATCGAGTAAGGAAAAGCACGTTCGAGGTGTATG 8303 36 100.0 34 .................................... AGCAAAACGCTTGCCAATAAAAGTAACTTTTTCA 8233 36 100.0 34 .................................... AATTGAGGCTCCACCATACCACGCAGTACCTTGA 8163 36 100.0 34 .................................... ACTAACAAAGATTTCAACAGGTCAGTTTTGTTTA 8093 36 100.0 33 .................................... CTAATAGGGGCAGGTGCTGCTTCTTCCTCTTCT 8024 36 100.0 34 .................................... TTCTGTTTTGTTCATTTCAACATCTAGTTGTTCA 7954 36 100.0 33 .................................... AAATCGCCCTTCTTTAAAGGGGGAGGGTAAGTT 7885 36 94.4 0 .................................A.G | ========== ====== ====== ====== ==================================== ================================== ================== 19 36 99.7 34 CTCAGAAACCATTCCCTGTTCCGAAGGGATTAAGAC # Left flank : CCATTAAGCGCCTGTTGCGTTATTACGCCTTGCATTGGGTTAATACCCTGAACGAGGTTAACTGATGGCAGACAAACGCAAGTTTTTAATTTGTTATGACATTGTCGATAGCAAACGCTTACGTAGGGCGCATCGATTACTCAGTGATATTGCCATGTCGGTACAGTATTCGGTTTTTGAAGCCGAATTAAGCAATGCCGAGCTGCAACAGTTGCAGGAAAAATTAATGCCGTGCATTGATAGCGAGGCGGACAAGCTCACCATTTACCGGTTATTTAAGACGAATGCCAAAATAGATTTGGCCGTGCATGACGATGACGAGCTGTTGTATATTTAATCGCTTGCAAAATAACCGTTTGTTTTATAGAATAAAAATTGTGCTGACTGAGTCTGGCCAGCACACTTCAAAGGAAAAATCGACAATGATAAGCTCTTTAAAATCAAGGATATATAAAGGTATCTGTAGTGTATTGATTTATAATAGCTTCTACGATCGTGCG # Right flank : CGCACATCACCGCATTAACTTCAATACAAAATAAATGTAACCCATACATTACCTATGCCATACTAACCCCCTAAATGTTACGTATGGCTTACAAGGTATGATCAACTTAGGCTTAAAAATAAAAGCTATCCGAAAAAAATCCGGCATGACTCAAAGTGACTTAGCGCAAAAAGCCCAGGTTACTCGGCAAGTCATTTCGCAAATTGAAAACGGCACTTTTTCAGGCAGTGTCACCAAACTTGAAAAAGTGCTGGCTGTGTTGCGTTACCAGCTTTCCATTGAAGTCTTCACCTTTCCCACTGTTGAAGAACTGGGGGATATTTTCAATGACGACTGAGCGCGTTAAAAAACTACAGGTCGCCAATCCTTCAGGTCTGTGTGGCATTCTGGCGCGGGAATCCGGCTATGCTTTCGCCTACCAACCAACAGCCATTACCGATAACCAGATAGCCATTGGCATGCCGGTTAGAACACAAAGCTACACGGCGCAAGTCCTGCCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGAAACCATTCCCTGTTCCGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1-2444 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUKJ01000411.1 Crenothrix polyspora isolate RSM_CP2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1 37 100.0 33 ..................................... AGGATGTTAATTTATATGTGCTGCAAGGTTTAC 71 37 100.0 34 ..................................... GACTATAATCTTGCTTACGCCGTTGAAACCTGGT 142 37 100.0 33 ..................................... AGGATGTTAATTTATATGTGCTGCAAGGTTTAC 212 37 100.0 34 ..................................... GACTATAATCTTGCTTACGCCGTTGAAACCTGGT 283 37 100.0 35 ..................................... GTTGCTCTGTTGTAAAGCTAGATAGTTGTTGCATA 355 37 100.0 33 ..................................... GCAACAACACCAAGCCTTTTTCTTTTTGCCCCA 425 37 100.0 34 ..................................... ATCCTTGGCACCAGGCACACCACCCTTTTATTTT 496 37 100.0 34 ..................................... GTATCGCTAAAACTGATTTGTCTTTGAACAAATA 567 37 100.0 33 ..................................... GAACATCAAAGATTGATAAATCAGCCATAAATT 637 37 100.0 35 ..................................... CGTTTAAATACCCGTCAAATCCAACCCCGCACACA 709 37 100.0 34 ..................................... CAAACCGTCTCAACGCTTATGCCGTCTTTGTAAA 780 37 100.0 31 ..................................... CCGTCAACTTTTTTCATTTCTGTAAGCTTGA 848 37 100.0 34 ..................................... CAACTTGCATGTGCATGTTGTGTTCGTATGCAAA 919 37 100.0 34 ..................................... GCATTAATTATTTCAGTTGCTGTTGAATCATTCC 990 37 100.0 35 ..................................... TTTTGGGGTTTATTCTGACTTGCATTTTTGTTTCT 1062 37 100.0 36 ..................................... TTCTACCGCCGCCATGAACTTGTCGAGAGGTATTTT 1135 37 100.0 32 ..................................... TAAACGCCGTTTGTAGATTGTCAATGTCACTT 1204 37 100.0 32 ..................................... AGGGATTTCCTCGAACGTCAAGCAGTCCCCAA 1273 37 100.0 34 ..................................... ACCAGCATCGTGCCATTTCTGAAATGGATGATCT 1344 37 100.0 34 ..................................... GTCAGCGTGCCCCCGCACCATCTCAACTGATTCA 1415 37 100.0 34 ..................................... GTCAGCGTGCCCCCGCACCATCTCAACTGATTCA 1486 37 100.0 34 ..................................... GATGTGGTTTAGCAGCTGGATTCTCGTGTACATC 1557 37 100.0 36 ..................................... TTGCCCTTTTCCGTCACTGAGGTTGATTTTTTATAC 1630 37 100.0 35 ..................................... ATTTGATTACTGTTCATACTATTATTCTCTTAGGT 1702 37 100.0 33 ..................................... CAACGTCAAGCAGCGTTGCTGAGTCGTTTTTTT 1772 37 100.0 34 ..................................... CTGCATTTCTTTGCTGTCATTGTCTTTCTCGTTG 1843 37 97.3 32 ..........................T.......... GACTGGTCAACTATCATGGTCTTTCTTTGCCC 1912 37 100.0 34 ..................................... GCAAGTTTCCCACCTTCTTCGCTGCGCGTGCCAT 1983 37 100.0 32 ..................................... TTTTGCAATGGCCTTGAGTTCTACCTGATTAA 2052 37 100.0 34 ..................................... CATTTGACGCAAGTGACGTTAATAAAATGTGAAC 2123 37 100.0 35 ..................................... TATTCGTCCTGCGTTATAAGCGACCACGCACCGGC 2195 37 100.0 34 ..................................... TTTGCCCCATTGATGTTCATGCCGTTTATCGTTG 2266 37 100.0 33 ..................................... CAGTCGCTGCTGGCGATTTTCTCATCGTTTTCA 2336 37 100.0 35 ..................................... AAGATTTCAAGCTCAAAGTGCATCGACTTTGATTG 2408 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 35 37 99.9 34 ATTTGAATTACTGACCTTATTAAGAAGGGATTAAGAC # Left flank : | # Right flank : CTGTCGCGGCTCTTTCAAAGATTTAACGGGGACTGAAATCTACAAACATAACCCCCCCCATATCCTCGCACCACAAGCTTGTCAAACAAGCCAAATCCAACTATCTGCTATTAAATACGCTCTAACACCTGAGTTGATTAACAATCGACACATTTTTTAAAAAGGATGAGATGAGCAATCGACAACTGTACCTGGCAGCCTACGACATATCCTGCAATCGCCGCCTGCGCAAAGCCCTGTACGCCGTGCGTGGCTACGCATCCGGCGGACAAAAATCAGTCTTCGAATGCTTTCTAAGCCCCACAGAAAAAACCGAATTGTTAGAAACCGTCAGCCAAATAATCGATCATCAAGAAGATCGCTTTATGCTGATACAACTGGCAGGCGTTAAACACATCCGTACTATGGGCAAAGCCGTATTGCCACAAGACGGACCATTTTTATACGTGGGGTAATCATGAGTAGCTTGTATTTAGATAGACAAAACCTGGCATTAAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAATTACTGACCTTATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1806-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUKJ01000044.1 Crenothrix polyspora isolate RSM_CP2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1805 28 100.0 32 ............................ AACAGAACAGATCAAACCCCGCGCATGTCAGA 1745 28 100.0 32 ............................ TCAGCTTGCGATTTTTTGACAGCTTTTTAAAA 1685 28 100.0 32 ............................ TGTTAATTTCTGCTTGTAAGCTTCTAAAACAC 1625 28 100.0 32 ............................ AAACAGAATACACAGCCAATGACGGCACTAAA 1565 28 100.0 32 ............................ GTCATTGTTGCAAGGCTTATAAACACCGTTGG 1505 28 100.0 32 ............................ TATTGTGAGGGGGTTGATGTCGGTAAGCATGA 1445 28 100.0 33 ............................ CAATATCAGAAAGATAACGCCCCATTGCTGTGG 1384 28 100.0 32 ............................ AAATACACAACAAGCGGCAGAGAAGGCTATGA 1324 28 100.0 32 ............................ ATGATGTAATCCTTTATTGATTGATAAAGATT 1264 28 100.0 32 ............................ TGTACGGTATGTACGAAAAAACCGAGGACGAA 1204 28 100.0 32 ............................ ATGCATTCGCCGTGGGGTCGTTGGAAGGATGA 1144 28 100.0 32 ............................ CATTGCTTGCTGGGCTTGGTAAATATATTTTA 1084 28 100.0 32 ............................ TTTGTCAAACCACACTTGCGTACCGACTGACA 1024 28 100.0 32 ............................ TTTTAAAACTGCCCATGTCCGCCTGCATCTGG 964 28 100.0 32 ............................ ATTTGGACTATTTCCAGGTGAGTCTTTTGCTT 904 28 100.0 32 ............................ ATTTGATGTAACAGCTAGCCGAGCTGAATGTG 844 28 100.0 32 ............................ TGTACCACTACATACAAGCATGGCTAGCAGCA 784 28 100.0 32 ............................ ATCTGGATTAATCGCGGGTATCTTAATATGCT 724 28 100.0 32 ............................ ATTAATGCAGATAAGCGCAGAAGAGCTAGTAA 664 28 100.0 32 ............................ GCATACGAAGGGCTTTACTCTATAAGCAATAT 604 28 100.0 32 ............................ TCCAACGCCATATTTTGCAAATGCAAGACTTA 544 28 100.0 32 ............................ TTAAAACAGATAATGATTTGTTAAGTGTTTGA 484 28 100.0 32 ............................ AGAAAAGTGATGTTATTTATCATGGTCGGCAT 424 28 100.0 32 ............................ ATTGTGCTGTATATTCATCGGGCAATGGTAGA 364 28 100.0 32 ............................ TGAACAGTGTAATCAAATAAGTGGATTGGTCT 304 28 100.0 32 ............................ GTAACAAAGAAGTCAACGCGCCAGTCACTACC 244 28 100.0 33 ............................ ATGTAATTAGGCTTTCGCAACTTGATTTCACGC 183 28 100.0 32 ............................ AGTCAGCACAACCATAGAATTAAATGGAAGGG 123 28 100.0 33 ............................ TCTTTTCATGGTTAATAATAATTTTGTCATTTT 62 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGGCTAGTTTAGATGTTTTGGCCAGTGCAATTTTGGACGCGTTTGATTTTGATAGCGACCATCTTTATGAGTTTAGCTATAAAAATGTTTTTGGTATGGAGGAGTCTATTTCGTGTCCTTATGCGGAGAATGAAAAGGGCTTGTTCACATCGGATTACCGTGTGGGGGAAATGCCGCTGTCTGTGGGGATGAATCTGACGTTTTTGTTCGATTTTGGTGATAATTGGGAGTTTCTGTTGGTTGTGGAGGCAATTGATACCGAAGGTAAGCCGCTGGCTAAACCAAAAGTGATTAAGAGCGAGGGCACAGCACCCAAGCAATATTCTGATTATGATGGGTGGTAGATTTTTTTGAATTACCCTGTGTTACCCAAAGTTTTTTAGGCTTTTTAAAAATATAGAAAAATCATAGTGTTACAAAGGCGTATTTTTTCATTGGTAAAAATGGAAAAAGTCGCTTAAACTGCTGTTGCATTTAATTTTTTTCGATTAAATGCTCT # Right flank : AGTTTGAAACATTTAAAAGCGGCGATACTAAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //