Array 1 119286-117578 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHXK01000008.1 Alcaligenes faecalis strain AF_174 NODE_8_length_222616_cov_45.4045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 119285 28 100.0 32 ............................ TAAGTGCTAAAGCATTTGGCATCACACTTACT 119225 28 100.0 32 ............................ ATCGGTTTGAATTGCCGGTGGGTTTTACTGGC 119165 28 100.0 32 ............................ TATATCAATCTCAGTAAATGTGGAAAATAGGC 119105 28 100.0 32 ............................ TGAAAGTATCTGACGCCTTGATGTTTCCGCTG 119045 28 100.0 32 ............................ TAAACGTGACGTGATTGGCGTACTGTGCCAGA 118985 28 100.0 32 ............................ TGTGTATTTCAGCGTTTCGCCCACCCCTGGTA 118925 28 100.0 32 ............................ AGGAAAGTTTGACCCGAATGCGTACATCGAAG 118865 28 100.0 32 ............................ GAGACCCACAAGCGCATAGAGCACAAGCTGTA 118805 28 100.0 32 ............................ CAGTGGATGTTGCGCTGGGTATTCAGAACAGC 118745 28 100.0 32 ............................ AGCTGCACCAGCTGGCCAGGAACAGGCAGCAG 118685 28 100.0 32 ............................ ATGTCGTAATTCCAAACGCTGCCCAGACTGAC 118625 28 100.0 32 ............................ GTGACCCCGCGCATCCCACCACCAGCCCCCGA 118565 28 100.0 32 ............................ TTTGATAACGTTCGTGACAGTTTGGACTTGCT 118505 28 100.0 32 ............................ TGGCATTGCGCCGTAGCGTTTGCGTACGTGCA 118445 28 100.0 32 ............................ TCTGGCAGCGCATCAAACTCGGTGACCTCCGT 118385 28 100.0 32 ............................ TGGACAACCTGCTGGCCTGCATAAAGCCGCAG 118325 28 100.0 32 ............................ ATTGGCACCTTGACCGCTATGCCGATCCTTCA 118265 28 100.0 32 ............................ TGTCCAAGCGCGCAGAGCTGCGCGGCCAGATG 118205 28 100.0 32 ............................ AGCGACAATTGGGCACGGCGACGCAGATCATC 118145 28 100.0 32 ............................ TTGTCAATCGCCCAGCAATAGCAAGAGCGCTC 118085 28 100.0 32 ............................ CTTTTCATTGGGCTGCAGCTCTACGGCTCAGC 118025 28 100.0 32 ............................ TTGGACAATCCCCCCGCTTTGATAGCCAACAA 117965 28 100.0 32 ............................ AAAGGAAAAGAAGGGCCCGAGTATGCCCATGG 117905 28 100.0 32 ............................ CATTGAGACTCAAACGACCGACGCGCCTGCTT 117845 28 96.4 32 ...........T................ TTGGCTAGCAGCTTTTCTTGTTCGGTTTCCAA 117785 28 100.0 32 ............................ GGAGATAATCTGATGGACTTACCCTTTACCTT 117725 28 92.9 32 ............T....T.......... AATCACTCGGGCCGCCAAGATCGGGCCGAAAA 117665 28 96.4 32 ............G............... GTTATTGAAATGACCGTGAATGCGTGTTCGGC 117605 28 75.0 0 ...........AG....TC..C...GC. | ========== ====== ====== ====== ============================ ================================ ================== 29 28 98.6 32 GTTTGCTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCAGAGTTGCAGAGTCTGGAGCAAACGCAGTGGTTACGTGGGATGCGTGATCATATAGAGCTCAAGGAAGTGTGCCCTGTGCCGGAAGGAGTGAAATACCGAACCTTTTATCGTCGTCAATTTAAAACGAATGTTGATCGTTTGCGACGTAGGCGCATGAAGCGGCATGGTGAAACAGCGGAGCAAGCTGCGGCAGCGATTCCAGATCGTGTTCAACAACAGCCAGACTTGCCTTTTATGCAGTTGCGTAGCCAAAGCACTGCACAAGCATTTTGCCTTTTCCTGGAAATGGGGCCGGAGCATGGAGTTCCTGCGGCCGGGGGGTTTAATGCTTATGGGTTAAGTTCGGAGGCGAGCGTCCCATGGTTTTGACCCTAATTTTTATTAAAAATAATTATCTTTAAAAATCAATGGTTTGGGATTTTTCTAAAAAAAGGGTTTTAGAGGTGAAAAAGCTGGAAAGCGCTGAGGATTCAGCGCTTTCAGCGTTTTGACTCTA # Right flank : TATTTTCACATCGTTAAGTGCCTGTTATTTTTAACATTAGCCGCTCGTTATCAATCAATAACAGAATTTATTTTCATTTATTCGCCTGTACTGATCTGCTGGTCCTTTAGTGACTGGCTCATGTTTCCACTCCAGGGTAAACAGGATTCCTTGTTTATCTCCTCCCCCTTTCAGCCCCTCTCCAAACAAGCTTCTTTACCCTGTTTCTTGAAGCTCCCCAAGCCCATCGCTATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAAGGAAGGCCTGAAAAAGAACCTCTTGCCCTGTCCGCTTGATTGCGTTGGATGGGTAAGCAAGCCTCTGCCTTCTTGACCACTACTACTTTTTTGATCACCTGCCAGGCATGACGCGGCGGGTGCAGATCTACGGTTTTAACGGAATTATTTATGAAGTCCAAAGCAGTGAAGCGCCGCTGGGCGTTGGCCCTGGTGGCGGTGCTGGTACTGGGGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 139136-137791 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHXK01000008.1 Alcaligenes faecalis strain AF_174 NODE_8_length_222616_cov_45.4045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 139135 28 100.0 33 ............................ TATCGTATGGCCGCAGCACACGCACTTTGCCAA 139074 28 100.0 32 ............................ AAAATATTGGCAGACGACTCGGTACTGCCGTG 139014 28 100.0 32 ............................ TTCAAGGCCCAGACAAAGCCTATGCAGCGCAG 138954 28 100.0 32 ............................ TTGCAGAACACGGCCTCGGCAATCATGGCCAC 138894 28 100.0 32 ............................ ACCAGTCGTGATATTGCGCAGTTGCTGGCTGC 138834 28 100.0 32 ............................ CTCTGGTGTTGCCGTCAGCTCATGCAGTAGGT 138774 28 100.0 32 ............................ AGCTTGGTGGCCACCCCGTTGACCATCCAATC 138714 28 100.0 32 ............................ CTCCGCCATTCGACACTGGGATACTCTCAACC 138654 28 100.0 32 ............................ TCGTCGACAAAACCCTGGACCCATGGCTGTTC 138594 28 100.0 32 ............................ ATGGACACGTGAGCTCGGGCGTCGAACTCTTG 138534 28 100.0 32 ............................ TACCTCGGGGTTATGAACGCTTGGCTCCGATC 138474 28 100.0 32 ............................ TTCCCCTCAGGCTGAACTGCGAGTCTCTCTGT 138414 28 100.0 33 ............................ ACGTGCCGATTGAGGAGGTGTGGGGAGTGGGCA 138353 28 100.0 32 ............................ CTCACGATTAAGGTTTTGCTCCCCAACCCCAC 138293 28 100.0 32 ............................ ATGGAGGGAGTGGGGGAGAGGTGTTCCAGCCT 138233 28 100.0 32 ............................ ATCTGGCTCAGCGTTTCGGCTGGGCACCACTC 138173 28 100.0 32 ............................ TATGTGGGCGTGTTCGTCCGGCTCAATAGCAT 138113 28 100.0 34 ............................ CAGCGCGTCCCGCTCGGGGAGCAGCTGGGCCAGC 138051 28 100.0 32 ............................ TGTCAATTCCGCCACCTCGGCTTGAGTGAGGA 137991 28 100.0 32 ............................ AACCAGGCCAAACACGGCAAGGGGATGGGAAT 137931 28 100.0 32 ............................ ATGCTCGGACGTTGTGGGCGGTTGTCCACCCG 137871 28 82.1 26 ...........AA....TG.T....... CGCCGATCGTTCGAGGGGGGGTAAAT 137817 27 78.6 0 ....-......CT..A......CG.... | ========== ====== ====== ====== ============================ ================================== ================== 23 28 98.3 32 GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACACTTAAATCGGGATTACGCAGGGCGGCTTGTACATCACAGTGGCGGTGAATCAGCCACGCCCCACCACAGAAATCTGCATCCCACACCACGGGCGGCCCCTGACGAAGGCGGGCATAAGCCGCATAGGGAGACGCAAGATTGAAATCGCCAAACATGACACCGTTTCCTAAAGATCAAAGCCAGCGTAGGCTAGCACTTGAGCCGAAAAGAGGCAGTCAGGAGATTGTGTCTATTAACTCTTTCTGGGTTTTTTGAGGGAATTAAAAGTTTGTTTGCGGTTTATGGGGGAGGTTGCTTGATCTTGTGTGACTATTTTTTACAATAAATTTGATTGGTGAGTTTGAGATGACTGCTTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAATTCAGATGCTTATAAACTGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAATCTGCTTGGCATTCAGGGATAAACGCTCTA # Right flank : AGCTTGTGGGTCTCTATCATGTATATGCAAAGTGTGCTGCTCTATGCGCCGCTGAAAAGGTGTTTAATTTCAGTTGTTTAGCCAGTTTTGTAATTGGTTGTCGCCTGTTCAGTTGCTAGACCGTTGCTGGTAGCGGCACTGTCGAAAATGCAGTTTAGGACTACCTCCCCAGCCTGCATTAATTCCAACTAATCACCGAGCATCAGAAGCCGCTGGAAGTTCTTCACTACCCAGTTTTTCCGTTTTACGCTGCGGCAGCTTCCCATTCAGAATGAAGTACGCCAGCAGACCGATCACCAGTCCCCAGAAAGCCCCGCCAATCCCGAACAGTGTGATATTGGCCGCTGAAGCCAAAAAGGTAATCAAGGCTGCTTCCCGTGACTTGATGTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGCGCCAAGCCCGCCAGTGTGGTGATAAAGGTCGCGGGGAAGGCCATGAATACAGCGGCCAGCGTGACCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //