Array 1 4086-3650 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QRZJ01000003.1 Bifidobacterium longum strain AF14-22 AF14-22.Scaf3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence                                                         	Insertion/Deletion
==========	======	======	======	===========================	========================================================================	==================
      4085	    25	  77.8	    72	GA....-..-...........G..C..	AGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACGGTCCGA	
      3988	    27	  59.3	    33	GC.ACG..C.....C...G.A..C.C.	ACGGCGGTCATCACGATCGCCACGGTCATCGCG                                       	
      3928	    27	  96.3	    54	........................A..	ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC                  	AAG [3922]
      3844	    27	  81.5	    33	GG.A..A.................A..	ATCATCGCGATCATCGCGATCGAAGTCGCGGTC                                       	
      3784	    27	 100.0	    21	...........................	GTCGTAATCATCCTCGAAGTC                                                   	Deletion [3737]
      3736	    27	 100.0	    30	...........................	GTCACGATCGTCGAAGTCACGGTCATCGCG                                          	
      3679	    27	  85.2	     0	..............C....C.....CG	|                                                                       	CC,G [3654,3659]
==========	======	======	======	===========================	========================================================================	==================
         7	    27	  85.7	    41	ATCGGAGCGACGGCGACGCGGACGGTC	                                                                        	       

# Left flank :   TGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGC
# Right flank :  ATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGGA

# Questionable array : NO	 Score: 4.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:-0.92, 8:0.8, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATCGGAGCGACGGCGACGCGGACGGTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [0,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.30,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.87   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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