Array 1 992-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWY010000002.1 Salmonella enterica strain 303 NODE_2_length_472318_cov_137.566700, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 991 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 930 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 869 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 808 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 747 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 686 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 625 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 563 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 502 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 441 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 380 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 319 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 258 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 197 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 136 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18616-17123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWY010000002.1 Salmonella enterica strain 303 NODE_2_length_472318_cov_137.566700, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18615 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 18554 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 18493 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 18432 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 18371 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18310 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18249 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 18188 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18127 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18066 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 18005 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17944 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17883 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17822 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17761 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17700 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 17638 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17577 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17516 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17455 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17394 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17333 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17272 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17211 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17150 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107261-106273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWY010000016.1 Salmonella enterica strain 303 NODE_16_length_107308_cov_135.986207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107260 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107199 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107138 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107077 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107016 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106954 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106851 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106790 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106729 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106668 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106607 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106546 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106485 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106424 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106363 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106302 29 96.6 0 A............................ | A [106275] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //