Array 1 12778-11223 **** Predicted by CRISPRDetect 2.4 *** >NZ_LELI01000014.1 Salmonella enterica subsp. enterica serovar Cerro strain 87 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12777 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 12716 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12655 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12594 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 12533 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12472 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 12411 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 12350 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 12289 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 12228 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 12167 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12106 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12045 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 11984 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 11923 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 11862 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11801 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11740 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11679 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11618 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11557 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11496 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11435 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11374 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11313 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11252 29 93.1 0 A...........T................ | A [11225] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30793-29484 **** Predicted by CRISPRDetect 2.4 *** >NZ_LELI01000014.1 Salmonella enterica subsp. enterica serovar Cerro strain 87 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30792 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 30731 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30670 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30609 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30548 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30487 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30426 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 30365 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30304 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 30243 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 30182 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 30121 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 30060 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 29999 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 29938 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 29877 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 29816 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 29755 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29694 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29633 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29572 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29511 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //