Array 1 23522-24647 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDB01000004.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SAL3275 NODE_4_length_135454_cov_1.75001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23522 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 23583 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 23644 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 23705 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 23766 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 23827 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 23888 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 23949 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 24010 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 24071 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 24132 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 24193 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 24254 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 24315 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 24376 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 24437 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 24498 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 24559 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 24620 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40906-42569 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDB01000004.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SAL3275 NODE_4_length_135454_cov_1.75001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 40906 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 40967 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 41028 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 41089 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 41156 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 41217 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 41278 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 41339 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 41400 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 41461 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 41522 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 41583 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 41644 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 41705 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 41766 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 41827 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 41888 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 41949 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 42010 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 42113 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 42174 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 42235 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 42296 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 42357 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 42418 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 42479 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 42540 29 96.6 0 A............................ | A [42566] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //