Array 1 764681-765737 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMRD01000001.1 Aurantimonas sp. Leaf443 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================================== ================== 764681 28 100.0 33 ............................ GCGTATCCCCAGACCGCCGCCATCTTCGCGAAA 764742 28 100.0 33 ............................ GCGAGTAGTGGTGTTGATCGTGCTCATGGATAA 764803 28 100.0 33 ............................ GTAGTCGCCTGCCGCTCTGACAAGACGAAAGGC 764864 28 96.4 33 ..G......................... TCCGCCTTCGCGAACTCGCCGCTGCGCAGATAC 764925 28 100.0 33 ............................ CATCTATGGACCGGCGCCGCCGCCGATGACGGG 764986 28 100.0 33 ............................ GCACCTGCCGAGCGCCGGGCGGTCTCGAACTCA 765047 28 100.0 33 ............................ CAATGAAGCGGCTTGAGCACGACCAGCCCGTAG 765108 28 100.0 33 ............................ CCGCGGTGAGCGCGGTCCCAGACGAACCAGGCG 765169 28 100.0 33 ............................ AAGCAATCGACCTCGCGCCTTTCGTCGGCGGCG 765230 28 100.0 33 ............................ TGGAACGAACGCATCCCGAGGGAGTGTGCCGCG 765291 28 100.0 33 ............................ ATCAGCAAAGTGTACCGGATGCACGCCAAACAC 765352 28 100.0 33 ............................ CGCCTGCCAATTCCGCCGCCGCCTCGATTTCGG 765413 28 96.4 33 .......................A.... CGACAGAGGGCGGATGTGCTCGATCTCCCAGGC 765474 28 100.0 33 ............................ TCGAAGAGCTCCGGATATTCGATGCGCAGCGTG 765535 28 100.0 147 ............................ TCTTGCGCTCAAGAGGTTGACCGGGCTGCACTTTGTCAAAGAACGTCGCTGCGGTCTACCAGACCGAGACGAGAACGCCGTCGAGATCGGCGAGGCGGCAGGGCGGGGTGCCGAGGACCTGGAGGCCGAGGCCGCCGGGCGCCTTGT 765710 28 67.9 0 C...CT...A.AG.A..A..A....... | ========== ====== ====== ====== ============================ =================================================================================================================================================== ================== 16 28 97.5 41 GGTCGATCCCCGCGTGGGCGGGGGAGCC # Left flank : GCCGGGCTCGAAGGTCTCGTCGAGATAGGCGGCCGCGACGCGCGGGGCGAGGTCCTCGCGCGCGAAGGCCGCCGCGCTGTCGCGCACCATCCGCTCGTCCTCGCCGAGCTGGTCGTCCAGGAGAAACGGGTCGTTCCAGGCAAAGGGCATGGCCGGCATCCTCGCAAGTCTCTCGACGGCCCCCCCCTTATGGCGCAGACGCGCGCGGGGTTGAACCGATCCTTCGGCATGACCTCATTCCCGCCGCTCATGCGGCCGCGCGTCCGGCCGGCTGGACCGGCCGAGGGTCATGGTGCGGACGACGGGACTCGAACCCGTAATCCCGGAGGCGACAGATTTTAAGTCTGCTGCGTATACCAGTTCCGCCACGTCCGCATCGTCCCTCCCGGTACAGAAGGACACGCGCCTTGGAAAGGGCGCCGGCGGGCGGACTGCGGGGGACGTGGGCCGTGCGGGCAGGGGGAGCTTGATATTTGCCGATGCGGATCGGCATCCCGAAA # Right flank : CGCGCTGCGTCTCGCCGTGCCAGTCGGAGACGACGGCCCAGGCGCGCTCGCGCACCGCCCGCGAGAGGTTGCCGGCGGCGTAGACGCCGGGGGCGGGCTCGGGCATCAGCGAGGCGAGGAAGCCGCGCGTGCGCTCGGGCACGTCACGCGTCACGATCACCGTCATGGCCATCGCCATCCTCCCGGAGCCTGCCCGCCGCCGGCATGCTCTTGTGCAGCGGGCGGTCGTCCTCGTCCTCGGCGGTCGGCGCGAGCACGGTCTTGATGCGGTCGATGAGGGCGGAAACGACCCCGTCGCGCTTCAGCCGCTCGCCGGCCATGCGCCGGGCGATGCGTTCCACGCCGTCGGCCGGGCGCTTCCTCGCCAGGGCGGCGGCCTTGAAGGCGACGGGGATCGTCACCGTGTCGCGCACGAGGTCGGCGACGTCGAGCACGAAGCTCTGGCCCGAATCCTCGTGGATGAAGCCGAGCTGCGGGATCGTGGCGGTGGACGCCACGGC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.70, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGATCCCCGCGTGGGCGGGGGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 776373-774515 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMRD01000001.1 Aurantimonas sp. Leaf443 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 776372 28 100.0 33 ............................ CTGCCGCCGGTCCATTTCCTTGAGATTGTCGGC 776311 28 100.0 33 ............................ CTCTTAGCGGCTCCGCGTATCCCCAGACCGCCG 776250 28 100.0 33 ............................ CGGCAGTAGCGAACCCAGCGGCTTTAATGGCGG 776189 28 100.0 33 ............................ CCGACGAGGCCGCCCTCACCGTTCATATCGGAG 776128 28 100.0 33 ............................ CCGCGTCGGGGTTCTCAAGGATGCGGTAGGATC 776067 28 100.0 33 ............................ CCCCACGACGATGACCGTCACCGACCTGCCGAT 776006 28 100.0 33 ............................ CGCGGATGGGGCTGAAGAGGAAATCGAGGTCGT 775945 28 100.0 33 ............................ CCCCTGGGTCGTCGCGCTCACCTTCACCGTCAC 775884 28 100.0 33 ............................ GTCGATCGTGGTGGAGGTGGTGGTCATTGCGGT 775823 28 100.0 33 ............................ TGGCCCATCGCCTGCTGATGGAGTGCCGTGTCC 775762 28 100.0 33 ............................ CATCAAACCACCGTTCTTCCATCCATTCACTTC 775701 28 100.0 33 ............................ CCACAGTGTCTCCAGTAAGACCGTGGTGGAAAT 775640 28 100.0 33 ............................ CTTCAGAGGGATATTCCCGACCTCTGACGCCGG 775579 28 100.0 33 ............................ CAATCTCGCCCACGAGCACGTCGTGTGCGCTGC 775518 28 100.0 33 ............................ TGCCCGAGAGGGCGAGCGGTTGAGGCAAGCCTG 775457 28 100.0 33 ............................ TTAGGAGGCTGATATTCCTGAAATAGGAAGCGC 775396 28 100.0 33 ............................ TCACCTCGGGCCGGGCGAGGAATTCCAGATGCA 775335 28 100.0 33 ............................ CTTGCCGCTGGTGCGCACGACGAAGGTGCCGGG 775274 28 100.0 33 ............................ CCAGCTACTGGGGTCGGTGGACACCAAGATCGC 775213 28 100.0 33 ............................ CTGCTCCTTCGAGACAGTCATGTCGTTCTCCTG 775152 28 100.0 33 ............................ CGTCGTCAACCGCCGGCTGATGACGATGCGGAG 775091 28 100.0 33 ............................ TGAGAAGGTGCGCGCGCTCTCGCTCGCGACCGC 775030 28 100.0 33 ............................ CGCCCAGATGACGCATCGGGCCACGAAGTGGTG 774969 28 100.0 33 ............................ CACCGTCACGCACTGGCGCGAGTTGGATTCGTC 774908 28 100.0 33 ............................ CACTTACGCCCATGTCTGGGAAGGCGCCTACCT 774847 28 100.0 33 ............................ CCGCTGTGGGCTTCATTGCCGGACGCCAATCCG 774786 28 100.0 33 ............................ CTCAGCCGCCGAGGCCGCGTCCCGCGCCGCCTT 774725 28 100.0 33 ............................ CAGTGCGGCCGACGATAAGAAGCCCGGCGATGT 774664 28 100.0 33 ............................ CGCGGGCCGGCGCCGCCAGCTTAGCGCTGCCAT 774603 28 96.4 33 ...G........................ TTGCATGTCGAGTTCGCAGTGCTGGTCCAGCGT 774542 28 78.6 0 CAG..................CC..T.. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.2 33 GGCTCCCCCGCCCACGCGGGGATCGACC # Left flank : TCGGTGACGGTGACCATGCCGCTCTCCACATGCATGTGCGCGTCGCACAGGCCCGGCACGACATAGCGCCCCTCCGCCTCCACGATCACCGTGTCCGGCCCCGCCGTGTGCCCGCCGTCCGGCCCGCACCAAGCGAAGCGCCCGTCCTTCACGGCGATGTCGCAGCCCGCCAGGACCTCGCCCGAATGCACGTTCACCCAGCGGCACCCGCGCACGAGGAGATCGGCCGGCGCGCGGCCCGCCGCCACGTCCACCAGAGCCGGCGCGACGGCATGGAAGGGTCGCAGGGTCTGCGCTGTCATGGCGGCGGTCCTCGAAGGCTCGAGCGAAAGGGACGGGCCCTGCTTAGCAGCCCCCGCCCCCGCCCTTCCACCCCCGCGCCCCGACCAGAATACGTTTGCAACCCCGCCGCCGAGCCGCGATAAAGGACGGCACGCACGACCCGCCCGCCGAAACGCTCTTTGACATAACGCAGCAATGCCAGCCGCTTGGCTGCAAGA # Right flank : CGAAAAATCCGGGCGCCGTCCGGTCGGCTCTTCCCAACCCTTTCGCGCCCGCATAGTCTGCAACCCTGGGTGAAGGGGCGGGAGGCCGGTCGTCTTGCAGTTTCCGATCGACGCGCCCTGGGCGAAGCTGCGGCCGCGCGAGGCGCCGCGGGAGTGGCATCCGCTGGTGGACCACGCCCACGACGTCGCGGCGGCGATGGAGGCGGTCTTGAGCCTGCCGTCCTTCGCCGGCCGGCTGGCGCGCCTCGCGGACCTTTCCTCGCTCGACGACGGCTGCCGCGCGCGGCTGGTCGTCCTCGCCTTCCTGCACGATCTGGGAAAGAGCAATCACGGGTTTCAGAACCGGGCCCTGCCCTTCGCGGCGGGCCTGGCGCGCGCCGGCCATATCGCGGAGGCCCCGATCGTGCTGCACGACGAAGCGCTCTGGGAGGCGGGCGGGCTGTCGCGGCTCGACACCTGGTTCGGCGAGGATTTCCACCGCTGTCTCGAGGTCTTCGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCCACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //