Array 1 177116-175427 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022527.1 Neisseria sp. KEM232 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 177115 32 100.0 34 ................................ CCATCTCGTTCGCCACGCCCCTTAGGGCTACGCG 177049 32 100.0 34 ................................ CGACGGTACGGCCTGCCGCTCGCGTTCGGGGACG 176983 32 100.0 35 ................................ GACCTTTATCACAGTTCGACCAAGCACATTAAGAC 176916 32 100.0 33 ................................ AATGTCACTTCGGCGGCCATGCAGCTGACGGGC 176851 32 100.0 36 ................................ AACAACGAAATCACACCCGATACGGCTTTTGAGGCG 176783 32 100.0 33 ................................ AGATGCTTCGTCAACTATCAAGACCGAGCCTTC 176718 32 100.0 34 ................................ TATTTTCATCGGGGGTGCGATAAACCGAAACCTG 176652 32 100.0 34 ................................ AAATTTGAAGAGGGCGGCCAGACGACCAAGTACA 176586 32 100.0 34 ................................ AGGCAGGTGTTGAACACGTCGGCATCCGCCATGC 176520 32 100.0 34 ................................ ATCCGAAGCCCGCTTCAGTTTGACGTTACAATCC 176454 32 100.0 36 ................................ AAAGGTGTACGGTGCGGTGTTGCCGTCGGCCAGTAC 176386 32 100.0 32 ................................ CGTGGACAGACAAAGGGCGTTGGCTGCTCGGC 176322 32 100.0 33 ................................ GTTGTTGTTGAGGACGTTGGCCTCGCAGTTTTT 176257 32 100.0 34 ................................ GTCCCCTTCGCCGGCGGCGTGTCCGTCCACCGTC 176191 32 100.0 35 ................................ ATCGCGGCGGCGTTGTCGGCCACGAATTGGCGGTA 176124 32 100.0 34 ................................ ATCAGCCGTCTGATTGGGACGGTACGGCGTTAGC 176058 32 100.0 34 ................................ TGCCCCACGCCGCCCAAGTGCAAAACGGTTTTTT 175992 32 100.0 35 ................................ AGGCGCTGGCCAACCGCACCCTGTGGCTCAAAACC 175925 32 96.9 35 ................T............... ATCGGTCCGGACAATCTCGGGGCATCTGACGAGAT 175858 32 100.0 34 ................................ ACCGCAACGGGCTTGCGTGCTGCGGCAGACGGTT 175792 32 100.0 35 ................................ CGCACATCTCGGCGGCTACGCCGTCGATGCAGACG 175725 32 100.0 34 ................................ CGTAGTACGCGGCAACCAATATCGGTCTGCCGTC 175659 32 100.0 35 ................................ TTCGGCCGATTTGTAGAGGCCGTAGACGCTTTTGT 175592 32 96.9 35 .....................T.......... GCGGCCGTCGATGTTTAGGCGGGCAAAGTCGTCGG 175525 32 90.6 34 ........A............T.........A GCAATGCTTTTTGCGGCGGTGGGTGGTGGTTGTG 175459 32 78.1 0 .....T......AA..A.T..TT......... | A [175436] ========== ====== ====== ====== ================================ ==================================== ================== 26 32 98.6 34 GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Left flank : AGCCTGAAAGAACCGCCATGCTGATGCTGATTACCTACGACATTTCCCTGCAAGACCCCGCCGGCGCCGCGCGGCTCAACCGCATCGCCAAACACTGCCTGGACTACGGCACGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCGCCCGACCAATGGGTGAAACTGAAAGCCAAGCTGCTGGACACCTACAACCCCGAAACCGACAGCCTGCGTTTCTACCATCTCGGCAGCCGCTGGCGGCGCAAAGTCGAACACCACGGCGCCAAACCGGCGCTTGACGTGTTTCAGGACACGCTGGTGGTGTGAATCGCCAACCTGCGGTTCGCACCGAAACGCGGGCAGGTTGGCGATAAGGGACAGTTCTTTAACAATCAGGAAATTATCGGGCGGGTGCGCATAAAGGCTGTGCTATACTCGCCCCCACTGCACTTTTGCGGCGACGTTGGCGAATAACAGGCCTCAAAGCCTGAATCGGCGGGCGTTCCGCAAAAGGCA # Right flank : TTCGCTTATCATGGCGTAATAGTTGCTGTGTGGGTGGGAATTATCTTTGACATCTAGCGCAATAATCCAAAGGCCGTCTGAAAAACATTCAGACGGCCTCCGTTTGCAAACCGTTCACGGCTTGGCGACAATGTTGCTGGCAAACTGCCGGAACTCTTTTTGCAGCTCGGGTGCGGCCGATTTGGCCAGCGGCTGCAGGATTTCTGCGCCACGTCTGCCGCCTGCTGCGATGCGGTATACCGCCCACATGATTTTTTTCTGTAAGGGGTAGCGGTCGGCATACGGCGGGTCGAAAGCAAAGGCTTTGACGAGGTGCGGCAGTGACGATTCGGACGGACATTCGGCCAGCAGCGTCACGATGTCTTCATGCCGTTCGTGCCAGTCTTGCGCCAGCAGTTTTTGGAACGCGGCGAGCGTCTGCGGGTCTTTGCACGACAACACTTCATGCAGGATAACCGCGTATTCCGCACCGCCGCCGTTTTGCGTTTCGGTGACGCGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //