Array 1 303-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVT01000211.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2897 NODE_211_length_315_cov_2.72951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 302 29 100.0 32 ............................. GCGGGGCCGACATTCTGCTGCCCGAGGGTACG 241 29 100.0 32 ............................. TGGCGGCGGTTACTGGCGCTGACAGTGCGGGA 180 29 100.0 32 ............................. CCGAGCCGCTGCTGGCTGTCACCACGCTGGAA 119 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 58 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGCGCTGTTTA # Right flank : GGCGGGGCCGACATTCTGCTGCCCGAGGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 161208-160507 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVT01000001.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2897 NODE_1_length_161255_cov_4.18253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161207 29 100.0 32 ............................. GCCGCTTTAGCGACCCTTTATCATGCTTCTAA 161146 29 100.0 32 ............................. CCCCCGCATAAAAAAACCCGCCGCAGCGGGTT 161085 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 161024 29 100.0 32 ............................. GCTACTGGATCACCGCAGAACAGATAAAAGAA 160963 29 100.0 32 ............................. GCCCCCGCAATACTGAGGCGTTGGAAAACCAC 160902 29 100.0 32 ............................. TTTTAATCTCAGCGGTGAGTACCGGCTTGGTG 160841 29 100.0 32 ............................. CTCTCAGTGTCACTTTTTTAGGACACTCAGAT 160780 29 100.0 32 ............................. CTTAGGGAGGCAAACTGTCCGCGCCTCCAGCT 160719 29 100.0 32 ............................. CACACAGGTGCGACAGGTAAACGTTCCGTTAG 160658 29 100.0 32 ............................. GATATTTTAAACCAGACTGACGCCATGATCGT 160597 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160536 29 93.1 0 A...........T................ | A [160509] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCTCTTCCGATCTCGTGCAATCCCTCATTGGGATGCATTCGAGAGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 886-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVT01000076.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2897 NODE_76_length_21774_cov_3.88799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 885 29 100.0 32 ............................. CCGTAGATCCCATCAGTGTCGTAGGCAATACG 824 29 100.0 32 ............................. GCATATCCCAGGCTTTCCACGTCAACTTGTAC 763 29 100.0 32 ............................. TTCCCGAAAGACAGCGCGGTTGCCCCGGCTCC 702 29 100.0 32 ............................. AGGGTGCGATCATCGTTCAGGAGGGCGGATCA 641 29 100.0 32 ............................. TCGAAACGTTTAAATAGTGTTCACCATCATGG 580 29 100.0 32 ............................. ATGCGACCAAAGAAGCGGCTGAAGAGAAATCC 519 29 100.0 32 ............................. CAGGTTGCTCGTTGTTTTGGTCTAAGAACAGA 458 29 100.0 32 ............................. CCCAACCTGCGGCAGCACCGTTGAATATTTTG 397 29 100.0 33 ............................. CGATAGCGGCGGCAGGTGCGCCCGTATTGCCGG 335 29 100.0 32 ............................. TAGATATTGGTCCGCCAGTTCTGCCAGTGTGT 274 29 100.0 32 ............................. CTCCTGACGTAACGTATTGACATTGGGTATAA 213 29 100.0 32 ............................. CGATTACGCCAAACGGTTGGAGGTGCGGATTG 152 29 100.0 32 ............................. TTGAAAATCTGGCTAGAACACTAAGTCCAAAA 91 29 100.0 32 ............................. AGTTACTCCGCCTTAAATACTCCCGCGTTTCT 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 926-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVT01000121.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2897 NODE_121_length_10105_cov_3.60106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 925 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 864 29 100.0 32 ............................. GGTGAAAAATTGAGCTTATATTCTGAAAAATA 803 29 100.0 32 ............................. CCGTTGAGCCTAATTTTGGAGCACTTGATTAA 742 29 100.0 32 ............................. GATTATCAAAAAACCAGGAGTTATCCTGCTCG 681 29 100.0 32 ............................. AGGAACTGATGTGCCGCGAGGCGTCAGATACA 620 29 100.0 32 ............................. TTCTTTCAATGAGCAAAACCCGTCGCTTAGCA 559 29 100.0 32 ............................. GCACTCCCGGTATCGCCGCAGATACAGGCGTT 498 29 100.0 32 ............................. CAACACGAAACGACATTCTCCCAGCTATTCAT 437 29 100.0 32 ............................. GGGACGTCACCATTTTTGAATTTATCAGCCGC 376 29 100.0 32 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGA 315 29 100.0 32 ............................. GACATTCAAAACTCTGGCGGGAGACATGGGCA 254 29 100.0 32 ............................. ATGGCCTGATAACCCGAGCTGTAACGTAGCGC 193 29 100.0 32 ............................. TTCCGCATCATTCCGGTGATGAGCATAATGCG 132 29 100.0 32 ............................. CGCTGGGCCGTGTAGTAATGAAGGGGCAAAAA 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTGTGGAACGATTCCCTCGTGTAGCAACTGCTGGTAAGTGTCCAGCGCATCATCAACCGTGTTGCGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCTTTGGACTTCGGGACGTGTGGCCAGTGGTTGCTCTAACAGACCGGAGGAAGTGAGGTG # Right flank : GTACCTATGGAAACGGCTGTAGGTTCTGCTAGTGTGTTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10093-9577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVT01000121.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2897 NODE_121_length_10105_cov_3.60106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10092 29 100.0 32 ............................. GAGGAATTGCCAAAAGTTGCACGGCACATCAA 10031 29 100.0 32 ............................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 9970 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 9909 29 100.0 32 ............................. GCAACATCCTGCTCACCAGCTTTGACGGTCGT 9848 29 96.6 32 ..............C.............. CCAGTCCGCCCACCACTGCATCATCTCCCGTC 9787 29 100.0 32 ............................. TAATTACGTTTTTTCAACGTCTCGATAATCGC 9726 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 9665 29 96.6 32 ......G...................... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 9604 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCAGCTATTCA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-2019 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVT01000179.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2897 NODE_179_length_2032_cov_2.2463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 100.0 32 ............................. GGGTGGTTTAAGGAGGCAGGGCCGGAAATTAC 100 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 161 29 100.0 32 ............................. TGCTTCGATTAGTGCAGGTGGTACGGACAGCA 222 29 100.0 32 ............................. CCCAAACTTTCGCCTCTTTTTGCTTATTTACC 283 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 344 29 96.6 32 ..........A.................. CGGTCAGCATTGGCGACGGGGAGTTTGCGCAG 405 29 100.0 32 ............................. CAGATGTCCATTGAGGCGGCAGGCGCGTCACA 466 29 100.0 32 ............................. CGTGCTGGACAGTACCTACAGTAACTTTGTGG 527 29 100.0 32 ............................. AGGGAATACCGACACCTGCCTGATTACCTGTT 588 29 100.0 32 ............................. AGTTTGCGTCGCTGCTGAAAGCGGCATAATTT 649 29 100.0 32 ............................. GGCGCCGCGCCGACGTGGAGCGTAAATAATTT 710 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 771 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 832 29 100.0 32 ............................. GGCCACCACTGGTGCGCAGTGGTTGAGGCGTC 893 29 100.0 32 ............................. CATTCGATGCCAGTAAAATTGAAGCACACCAC 954 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 1015 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 1076 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 1137 29 100.0 32 ............................. CCGTTAAGGTCGCTGGCGCTAACATCTAAAAT 1198 29 96.6 32 ............................A GCAAGCACAAACATAGAGCAAATTAAAATAGC 1259 29 100.0 32 ............................. AATGCTCCCTCTCCGCGTTTTTGCGTCGGCTG 1320 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 1381 29 100.0 32 ............................. CGGCTGTTGAGGATGTTCGCGAGCCAGTAAAT 1442 29 100.0 32 ............................. AGAGCTCAACCCGATAGCCGCCAGCCCCGTGA 1503 29 100.0 32 ............................. ATGCTGCTGGCCGTTTCGATATGAACGACGCA 1564 29 96.6 32 ............................C CCCTGATTGTCCTTAAACCAAGCGATCGCATC 1625 29 100.0 32 ............................. TCCAGCATTGAATCTTTAAAAGAGGGGGTGCT 1686 29 100.0 32 ............................. TTTGCGAACTCAGGGTAGGTTTAGCTCCAGTC 1747 29 100.0 32 ............................. TTAATTTGCTTCGCATCATTCATATATCTCGC 1808 29 100.0 32 ............................. TTCAGTATTCACCAGATAACGTGGTGATTCTC 1869 29 96.6 32 A............................ GCCGGGTACAATGGATTTTCGATAACGCCGCA 1930 29 100.0 32 ............................. TTTGGCGACTGTTTTAGCAGCAGAGCCTGCCG 1991 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGACCGGGCAACTGGGCGATCGTCTGGGCGCTGTTTATG # Right flank : AGGGGCGTTCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //