Array 1 7928-5314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCQ01000003.1 Listeria monocytogenes strain ICDC_LM0146 NODE_3_length_355508_cov_39.6672_ID_588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7927 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7861 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7795 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7729 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7663 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7597 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7531 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7465 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7398 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7332 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7266 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7200 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7134 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7068 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7002 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6936 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6870 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6804 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6738 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6672 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6606 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6540 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6474 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6408 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6342 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6276 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6210 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6144 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6078 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6012 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 5946 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5880 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5814 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5748 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5682 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5616 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5550 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5484 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5418 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5352 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5317,5320,5325] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //