Array 1 11868-13292 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJHLU010000014.1 Aerococcus urinae isolate Au-06-U13, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     11868	    32	 100.0	    34	................................	AGTATCGTAATTTAGTTTTCTTTTGCAGATCTTG   	
     11934	    32	 100.0	    35	................................	ATCTTCTCGTGATACTGACAAGGAAGCGACTAAAG  	
     12001	    32	 100.0	    35	................................	TTGGGTGTAAAAGCATGCCCCTTCATCGTAAATTT  	
     12068	    32	 100.0	    35	................................	TTTGTCCCACTCAAAATCCGATACCTGCATGGCAA  	
     12135	    32	 100.0	    35	................................	TCATTGTTGTCAAACCATTGTTTTAAGGTCTTCCA  	
     12202	    32	 100.0	    33	................................	CGGTAACGTCTGTCCTCTAGGCTATCGATCTCT    	
     12267	    32	 100.0	    34	................................	CGGTCACTGCTGGTGTAGTCGATCCCACGCTCAT   	
     12333	    32	 100.0	    37	................................	ATGAGCTCTTTGCCGGCGTTGATTACGTCCTTAACGG	
     12402	    32	 100.0	    34	................................	ATCGCCCACAAGCTGGGGTTTCCCGATTAGCTCA   	
     12468	    32	 100.0	    35	................................	CGCTCTTCGGATAAACCCATTTGTTTACCATGATC  	
     12535	    32	 100.0	    34	................................	TTACGCGGGTAGTGCTGGGAACAGCTTTGGCTGG   	
     12601	    32	 100.0	    33	................................	CGAAAGCCCCACCTACAATAAATAGGATATTAG    	
     12666	    32	 100.0	    34	................................	TTCTTTTTTACTTCTTAAACTACTTAAAGCCTTT   	
     12732	    32	 100.0	    33	................................	AACATGTCTTCGATCTGATCGATCTGCTTTTGC    	
     12797	    32	  96.9	    35	..........T.....................	TCTTAATTGCTTCACTACGCGTGAAAATACTTGAC  	
     12864	    32	  96.9	    34	..........T.....................	ACACCAGAGGAATACAAGCAAGGCAAGCGAGTGA   	
     12930	    32	  93.8	    34	................T.T.............	CATGAGACAGGGACTTATAAAGATCCGCCCCGAC   	
     12996	    32	  90.6	    34	..............A.A....A..........	CAGCCACCCTTAGTGTCTTTGGACGAGACTTCGA   	
     13062	    32	  93.8	    34	.............T.............T....	TCCTATAATCCAAAATCAATAGAGTAAAATTGAG   	
     13128	    32	  90.6	    35	T.........T.A...................	GACTAGATCACCATTAGTATCATAAACGCTTGTAT  	
     13195	    32	  93.8	    34	..........T.....T...............	CACTATTTGTTAGAGCGAATCAAGTGTTATCTGA   	
     13261	    32	  87.5	     0	..........T.A....A...........T..	|                                    	Deletion [13306]
==========	======	======	======	================================	=====================================	==================
        22	    32	  97.5	    34	GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT	                                     	       

# Left flank :   AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTGAGATGATGGTGTTAATTACTTATGACGTGAATACAGAAAGTAAGGCTGGCCAGAAACGCTTACGCAAGGTAGCTAAAGTTTGTGTTGATTATGGTCAACGGGTTCAAAATTCTGTTTTTGAATGTAGTTTGGATCCTGGGCAATTTGCACTCGTTAAATCGAAGTTAGATGATATCATAGATAACGAGATCGATTCGATCCGCTTCTATAATTTAGGTAAGAACTGGGATCATCGAGTACAGACTTTAGGACGGGACGATACGTATCACCCTGAAAAGGATGTCTTACTCCTATAACGAACCTCAAGCACACAGATTTATAGTGAAGGCTTCGGATGAAAATTGGCATTAAAAATATAGTATAAGTGATTATTTTGCTCTTTTTGTTCCACTTATATTATGAAAAAAGGATGAAAACTTATAAAAAGAGCT
# Right flank :  TTTACATGCAGCTAAGTGGTTCAAATCAGGTACAAAGTGCAGGTTTTCTTTCAGCAAATACTTGACTATTTACACCAAGAAATCAGCCCTTACCAGCTCCACCAACAGAGAGCCTAACAAGGGCTTTTTCTATTGCGGCGACTCGCAAAGGAACTAAAATTATTTAACGGTTCCTAAAAATAAATCATAACACCACTGAAACCGATCATCGTTGATCTTTTTTACTAAGTTGACAGTGGCACTTAGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTATTTTGGTTACCCCAATTGAAGAGGAGTCTATGCCGGATGTAATCGAAGAGAATGAAGCCGCATAGATGGCGGTTATGTGAGACTGTGATTTTTTACACAAGTTCACATAACCTTTCTATGCGGCTTTTT

# Questionable array : NO	 Score: 9.14
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.30,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-16] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [10.05,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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