Array 1 36302-34119 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFH01000115.1 Acinetobacter baumannii UH7607 ctgN72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36301 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 36241 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 36181 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 36121 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 36061 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 36001 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 35941 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 35881 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 35821 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 35761 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 35701 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 35641 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 35581 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 35521 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 35461 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 35401 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 35341 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 35281 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 35221 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 35161 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 35101 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 35041 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 34981 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 34921 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 34861 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 34801 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 34741 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 34681 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 34621 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 34561 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 34501 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 34441 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 34381 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 34321 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 34266 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 34206 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 34145 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41392-45922 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFH01000115.1 Acinetobacter baumannii UH7607 ctgN72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41392 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 41452 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 41512 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 41572 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 41632 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 41692 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 41752 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 41812 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 41872 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 41932 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 41992 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 42052 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 42112 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 42172 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 42232 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 42292 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 42352 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 42414 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 42474 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 42534 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 42594 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 42654 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 42714 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 42774 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 42834 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 42894 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 42954 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 43014 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 43074 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 43134 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 43194 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 43254 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 43314 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 43374 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 43434 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 43494 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 43554 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 43614 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 43674 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 43734 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 43794 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 43854 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 43914 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 43974 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 44034 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 44094 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 44154 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 44214 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 44274 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 44334 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 44394 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 44454 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 44514 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 44574 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 44634 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 44694 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 44754 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 44814 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 44874 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 44934 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 44994 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 45054 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 45114 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 45174 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45234 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 45294 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 45354 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 45414 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 45474 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 45534 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 45594 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45654 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 45714 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 45774 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 45834 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 45894 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 76 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //