Array 1 7599-6292 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXYC01000009.1 Akkermansia muciniphila isolate Mouse_1_89.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 7598 33 100.0 34 ................................. TTAATTTGCTGAGCACGACGGAGGTGACTTCTTA 7531 33 100.0 34 ................................. ACTTCCTGGGACAGGCAGATCACGGGGATGCTCG 7464 33 100.0 35 ................................. GATTTTTTGTGTAACAATGTAATTGTGGTCATCAT 7396 33 100.0 34 ................................. ATCACCACACCAACTTTCTATGCCGGATTAACTC 7329 33 100.0 34 ................................. GTTGTTGCGGTCGGCCACATCATCCCCGGCATCC 7262 33 100.0 35 ................................. AGGGGACGGAGCGTTGTTCCACGGAGTTTCCCCTT 7194 33 100.0 34 ................................. TTGGACAGGCTCATGTCAATAGTCCTCCATGTTG 7127 33 100.0 34 ................................. TTGAGGGTTTGAATGTTGATTTTGGCGGGGATCC 7060 33 100.0 34 ................................. TTCTCGGATATATCGTCTTTGATACCCGCACACA 6993 33 100.0 34 ................................. CACGGCATTTGCCGCATAATGTAATCTTTGCACA 6926 33 100.0 34 ................................. GGCTTGGAGCCTCCGCTTCCCATTATCGCCGATG 6859 33 100.0 34 ................................. CCTCTCTTTTTAGGCGGAAAGGCCACGAACAGCG 6792 33 100.0 34 ................................. TCCTACCGTATGGAGACAGTGGAATCGGAATCCG 6725 33 100.0 34 ................................. CGTGTCCTGGTAGGTCACCGGAAGCGTGTCAAAA 6658 33 100.0 34 ................................. CGAGTATGCCTCCACCAGCGCCCGCGAAAAGATG 6591 33 100.0 34 ................................. TCGAATGTCCGGGACACAGCCCGCAACGGATATG 6524 33 100.0 33 ................................. TCTTTGTTGAGCGGGTACCATGAGCCTGTGCTG 6458 33 100.0 34 ................................. CTCGAACGTGCATCCGTAATTGGCAAGGCACCAG 6391 33 100.0 34 ................................. CAGGTGCGGGTGCAGAAAGATACGGAGGGCGCCG 6324 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 20 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAATAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTTCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGTTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATATGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16555-16070 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXYC01000009.1 Akkermansia muciniphila isolate Mouse_1_89.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 16554 31 100.0 34 ............................... TTACAAAACTGTTTTATGGATACAAAAATATATA 16489 31 100.0 34 ............................... CTTTACAACCCTTATAGGTTATTATTTCCCTATG 16424 31 100.0 33 ............................... GGCATTCAGGCAGTCGGACGGTTCAACTCCGGA 16360 31 100.0 34 ............................... GGCTAAGTGTTGAGGGTTCCCGTCAACCAGCCGG 16295 31 100.0 34 ............................... TGGAGGGAGTGAGTATGAAAGGGAAGGATTTGAG 16230 31 100.0 34 ............................... GACCAACAACGTACCCGGCACGTGGTGCATCGGC 16165 31 100.0 34 ............................... CTTTTTCCGGCTCCTTTCCGCAATGCGCATCAGG 16100 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 8 31 98.8 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : CGCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCTCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGG # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //