Array 1 280512-279388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQD010000006.1 Limnothrix sp. FACHB-1083 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 280511 36 100.0 35 .................................... TCCCATCCCGATTGCAACGCCCCGGTGGCCCCAAC 280440 36 100.0 36 .................................... CCGTGCCGACAACTCCGTTGGTTGTGAGCGAAAACA 280368 36 100.0 36 .................................... ATAACCCGATCGTCCAAATCCTGTTCACGCAACAAC 280296 36 100.0 37 .................................... GATTTGGCTCTGCGGTTTGGGATTGAGGATGTGGATC 280223 36 100.0 37 .................................... TAAATTACGCCTTTCTACGCGGGCGTTTCGATGGTTG 280150 36 100.0 36 .................................... CCATAGCCAATTTCCCGGGCCAGCGCTTGCAACTCC 280078 36 100.0 35 .................................... GATCAGGACATCCAGCAACGGGTTGGGGCGATCGC 280007 36 100.0 37 .................................... CCATTTGCACTTGCGTCTGCTTCTCGAAGGATGGGCA 279934 36 100.0 38 .................................... TATGTCAAGGGCATGGAGTCGGGTGTTCTATCACCGGA 279860 36 100.0 38 .................................... GCCATGCCCTGACCATCACCGACGGCAGCAGCACGACC 279786 36 97.2 34 ...................T................ TCGGTGAACCGGGCGATTTTGATCGTGTCGAAAC 279716 36 100.0 38 .................................... CAATCCAAGGTTCAGATCATCGAAGCTCGGATGTCGCG 279642 36 100.0 36 .................................... TACACACTGTCAAACCCTTTGGCGATCACAAAGTCC 279570 36 97.2 36 ...................T................ CAAACGACGGGGCCGTCAGAGTCACAGCCGGTAATC 279498 36 100.0 39 .................................... CCTTCTCGTAGCTCAGCGGGCGTAATGGGCGGGGATTTT 279423 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 99.7 37 GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : TCGGCCAGGGTCGATTTACCGTGGTCAATGTGCGCCACGATCGAGAAGTTACGGATGCGCGAAACGGGAACGTCGGTCATAGGAGCGGAACGGTAGGGCAAACGGGGAAAGGAAGCCAACCGCATTGTAACGAATTCCATAGCGTCTAATTCGCCTTGGCGCTCTGGATTGTTTGGGGCCAATGGAGCGATCGGGCTTTCGGCATGGATCGCGATCGGGCGGGGGCGATCGGGCGGGCTTGTTGCCCAAAAACAAGCACCTGGGGCGGTGGCGGCGGAGCGAGGGGCTGGAAGGGCGCAGAATGTTGATGGGGGTTGGGTTTGGCGATTTTTGGGATCTTTGGAGATGCTTGTAAATGGCTGAAAGGGAGATGGGGCAAGGGTTGGGCGATCGGCAAAAGGGCGATCGGGGGTGATGTTTTGGCAGATGCGGGGCGATCGGCTAAGATGCTTGTAAGGTTCCATTTCGGCGCTTGTCCCGTAAGGGTTTCAAGCGGCGGG # Right flank : AGCACCGCACAGCGCAGCACCGCAAAACACTCGTTTCAGCCCTGTTCTAAACTTTCCAATCCCGTGAGGTGGTGAGTCTGTCGTCAGATTCGCCACCTCACCTTTTTGATCGCCTCCACCTCCTTCAAATCCTTTCGCATCAGTAGAAACCCGTACTCCCCAAAATCAGAGCTTTAACCCGCTGATTCATACCTGGCTTACTCTCCGCCGCTCTTCGCCTCCGCTTCGTCACCCCCTGATCGCCTGTGATCTGTCACCACACCACCAATTGATTCAGAAAACGCCCATCTTTCGTGTTCATTAGAGAGCGAAAATCAGCCGAAAGATAATCTTTGCATTTTCGTCTACTCCTCAATTCTGAAGCCTATTCCGTAACCTTCGTCTGGAAAGTCTTGTCCCAATCGATCGACTGCGGTTGGCTGTCTCTTAGGTTTAATGAAACTAATCAGGAAAGCTTGCGGCGATCATAGGTTGCTGAAATATTTGATCGCTTTGCATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 10935-11633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQD010000016.1 Limnothrix sp. FACHB-1083 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 10935 37 100.0 36 ..................................... AGCAACAAACTGCTCGTGATCCTTGAGGGCCAAAAG 11008 37 100.0 39 ..................................... ATAAAGCTCGGCAAGCTGGTCAAGGCGCTCTGCTGTCAT 11084 37 100.0 37 ..................................... ATCGTCAATCAGTGTCCGCCCCGACAGGGCGATCGGG 11158 37 100.0 35 ..................................... ACCAAAGCGATAGTCACCTTCTGGGCCGATCAGCT 11230 37 100.0 35 ..................................... TTGTCTATTTTACGCATTGCCGCGTAACACGGGTG 11302 37 100.0 35 ..................................... ATCGCTGGACTGATTGCCAGCGGCTTTAAAGTGTG 11374 37 100.0 37 ..................................... CTCAAGTCCCCCGCGCTGCCGGGTCGGCGGCTTTTCC 11448 37 100.0 39 ..................................... CAGAGCCGAAAATCGCTAATCGATTGGAGAAACCGCAAT 11524 37 91.9 36 ........A.G...................C...... CTGGATATCCCACGGGCGACCCTGAGTTTCCCCCGC 11597 37 94.6 0 .A........G.......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 98.7 37 GTTGCAACGGAAGCCTGATTTGGGCGATCGTTGCAAG # Left flank : GTCGGGCTTGTGGATGGCAGGGCGATCGAGATGCGGTTGGGAGTGCTAACATATTGGCACGATCAATTGATCCGGCTTGGCCGGATTCGGGGCGAATTGTACCCCACACTTTAAAGCCGCTGGCAATCAGTCCAGCGATGTCAAAAGCAGGTCGGTTGCACGTTGGCGCAGCCAGACCCCAGCCCCTTGGAGGGCCGCCCTTAACCGGGAGTAGACCGCCTGAGTGCGTTGATAGGTCGCCACGCATTACGCGCGTACCGGAAGCTATGGCTGAAGGTCTGGTGGCTGAATCGACCCGAAAGCCCCGCCCAGCGGGAAAGACGGCGGTGAGGGCCGATAAAAAGGTTCGCGCGAGTCGTGAAAGCCTTGCCCCATCTGCAATCCCAGCATCGGTAGGATTGCACGACGATCTGGCCAACACCCAAAAACAGGATACCCGTAGCAGGTTCGCGATCAAAGCACCCGAAACGTCCGGCCAGCTTACTTTGTGGGATTGGGCG # Right flank : GCGAAGGGAGACAGCTAGCTGTTTTGCATCCCCTCAATCATCTTAATCACCCGCTGCATCTCGGTTTGTAAACCGGTAATCTGGCTTTGCAGCGGCTCAATTGTTTGGGCGATCGCCTGCTGAATGCCATGGTCGATCGCCGCCAGGATTGAATAGGAATTCAGGCTAGAAAACTAGAGATAGCGAGAAATTTTAATTTTGCTGACCTTGTTGATGGGTTCTGCACTCTCCCAATAAAAACAGAAAATCACTAGATAAGGAAGAATAGCAATAACATTAGTCAGCACCGTAGCAATTACATGGATGATAAAACTTTCTTCCAGCCCCATGAATCCAGAAGGAATGTAAATTGCCACAGAAGCAATACCCATAAGCAGGATTGTAACTAAAACGCTCAATACCGTAGTTCCAGCAATTCTCCATCGCCTTCCTTGAGTTAACTGGGTGCTGCGCTGTCTAGCCTGAGAGCCAGTGGTTCCTTCCAAAACAACAACTGGATC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGGAAGCCTGATTTGGGCGATCGTTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 147548-146230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQD010000004.1 Limnothrix sp. FACHB-1083 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 147547 36 100.0 25 .................................... CGATTTCGCTGCGATTTATCTTGTA Deletion [147487] 147486 36 97.2 38 .................A.................. GCGAGGCACTATTGGCAGTCGCGATTTTGGAGTCGAGA 147412 36 100.0 37 .................................... AGCGCAAACTGTACGCCCTGGGGCAAGGTTGTAGACC 147339 36 100.0 34 .................................... ACTGCCCGTGAGGCAACATTGACCGCCGCATCGG 147269 36 97.2 36 ...........A........................ GATCCAATCCTGCTTTTTGGCCTTGCTCGGCAACTT 147197 36 97.2 34 ..........................T......... TCAACGTAGCCCTCGGAATCGTAGAGGCGAGACA 147127 36 100.0 36 .................................... TCTTCTGGATGGTGAAGACTACCCTATTCCGTCTAT 147055 36 100.0 38 .................................... GGATCGCCCTTTCGTTCGCTCGATACCACCTTGACCCT 146981 36 100.0 34 .................................... TCAGTCCCATCGGTTCCATCGGTTCCGTTGCGCC 146911 36 100.0 37 .................................... TCCTTCAGCGATTTAGAGTCCTGAGAGTGTTGGGATG 146838 36 100.0 37 .................................... GATAGTCGCCGGTCAAGTCAGCGGCAGCACAGCACAG 146765 36 100.0 34 .................................... AAGCAATCCAGTGCTTGCGGCCCACTACCTCGAT 146695 36 100.0 34 .................................... GAATGGAGGTATTGCGATTGCCAGCTCGTTTGTT 146625 36 100.0 34 .................................... TCTATCGGCTGTCTACCCTGTCAGGGCGGGCAAT 146555 36 100.0 35 .................................... TCGGTTGCCATGTCTAGTTCTTCTCCGCATTTACA 146484 36 97.2 34 ...........A........................ TGACGAGGCGATCGAGCAACTTCAGCTAATCCTT 146414 36 100.0 37 .................................... ACCATTCAGAGAACTACAAATGAACGGGATCGTTTCT 146341 36 100.0 40 .................................... ACCGAGCCTGACTGAAGTTCTGACACGGTGGTGATCCGTG 146265 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 19 36 99.4 35 GTGCAACCCCCGCCAAGGGGAAAACACGTTGATCAG # Left flank : GTTTTTTCCCGACAAAAACGCCATCGTCGGAGCCTTGGCGGAGCGCTATAACGATCAGATGTATGCGCTATTTCTCCAACTTCATGCCTCAGAGGCTAAAAATTTATCCCTCAAGGATTATGTTGATCGGATTGTTGATTCTTTCGATCAATTTCTGAAAACCCACCCGGGCTATTTAGCCATTCTCATGCCCTTGCAAGGACTGCCAGAACTGGCCGAAATTGATGCAGAAAATGACGATCGCCTGATCCAGGGCTACATTGACTATTTTCAAGATCGCTATCCCGGTCAAATGGCAGAAACCTATGAGGCGATCGCCTTTGTGATCGTCAAGGGAATTGGCACATTGCTATGGTTTACTTTCGGGCAGACGGACTTGGCACAAACCCGCTTAGTGCAGGAAACGAAGAAATTAATGTTGAGTTATTTATCTAATTATTTTGAAGACTCCGAGATCCTTGAAAGCTGATCGATCGGTAGTTGTTGTCATTGTTGTTGTA # Right flank : GGTACCCTGCAAAGAATCGGCCCCGCAAGGCTTCCCAGGCACTTTTACAAGCACCCTTCTAAAAGAATAGCTGACCAAGCAACTTCCGCAGCAAAACCACAAGCTTGAATTGCTGAAACATCTATCCTTAAAAGCTTTCAGAAAATACAAGCATCTAAAACTGCTGAAATCGCTATAGTCCCCACAATACGGGCAACTCATCCAATCGCCCGCAAAGCGTCGAGAGGTGCTTGTATTTGGGCATAACGTCTCAAAACAGCGATAACTGATCGCCAAATTGCACAGCCCCTTGCGAGTCACGATCGCCCACATCCCCCACAATCTCGATCGGCGCATTCTCCACAGGAGTATCTTTGGGCTTCGCCTTGCCCTTCCGGGCCTTGGTCGCCTTCGGTTTGTCCTCCGGCTTCGGTCGATCGCCCGTCATCATCGCCTTGATATTGATCGCCGCATTCCGATCGCCGTCCGAGTCATAGTGCCCGCAGTCCACACAACGGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCAACCCCCGCCAAGGGGAAAACACGTTGATCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //