Array 1 3212448-3210101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029078.1 Streptomyces griseoviridis strain K61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3212447 29 100.0 32 ............................. GGCCCTGCCGACGGCCGTGGCCGCGTCGAGCT 3212386 29 96.6 32 ............................T TCCGCGGGCATGGTGGCCGAAGCTGCCGAACG 3212325 29 100.0 32 ............................. GAGTACGACATGTCGAAGGAGCTCAACCCGTG 3212264 29 100.0 32 ............................. ACCTGCATCGCCTGAACGAACGCGTCGCAGCC 3212203 29 100.0 32 ............................. GTCGAAGCCCCCGACCTGCCCGCGCCCGAACC 3212142 29 100.0 32 ............................. CGCGAGCAGACGGCCTAGGTCGTCGCGTAGGC 3212081 29 100.0 32 ............................. CCTGGGGCGCGGCAGCCGACGAGATCAGCAAG 3212020 29 100.0 32 ............................. TCCCAGACCAGGCTGGTCGCGCCGTCCGTGGT 3211959 29 100.0 32 ............................. CTCGGCGAGGGGCTGGCCCAGCCAGTCGAGCC 3211898 29 100.0 32 ............................. CTGATCGGGAGTGATCGGGCCTGCATGTTGTT 3211837 29 100.0 32 ............................. CGCTCGACCACACCCCGGGGCCGATCGACAGG 3211776 29 100.0 32 ............................. AGCGGACTCCGATACCGATGACGCCCCGGCAG 3211715 29 100.0 32 ............................. GGACGGTGTCGGCCGCCGCCGGGTCGGCGGCG 3211654 29 100.0 32 ............................. GCTGGGAGGACCAGCCCGGGCTGAGGGTTCTC 3211593 29 100.0 32 ............................. GGACGGTGTCGGCCGCCGCCGGGTCGGCGGCG 3211532 29 100.0 32 ............................. GCTGGGAGGACCAGCCCGGGCTGAGGGTTCTC 3211471 29 100.0 32 ............................. GGACGGTGTCGGCCGCCGCCGGGTCGGCGGCG 3211410 29 100.0 32 ............................. GCTGGGAGGACCAGCCCGGGCTGAGGGTTCTC 3211349 29 100.0 32 ............................. TGGAGCACCGAGGCGAGCACGTTGACCACCAT 3211288 29 100.0 32 ............................. GTGTACCTGCGGGTCGTCTGGGACACCGGGCT 3211227 29 100.0 32 ............................. TTCGCCGAGCACCAGCAGGCGCTCGCCGACGA 3211166 29 96.6 32 ...........A................. TGCACCACGCGGACCGCGGCCGTGTCGAAGTG 3211105 29 100.0 32 ............................. AAGGAGCTGGAGGACAAGGCCCGTGGGGACGA 3211044 29 100.0 32 ............................. ACGGCCGGAAGCCACGTGCGGCCGTTGTCGTT 3210983 29 100.0 32 ............................. TCGGCCACGAGCTGCGCGACGGCCGTCCCGCG 3210922 29 100.0 32 ............................. CATTTCGTCGTCGACCCCGCGAAATACGACTT 3210861 29 100.0 32 ............................. GCACTGCACGCCACGGTGAGGATCGTCGACTT 3210800 29 96.6 32 .........................C... CTTGATGTCGGTGTGTCGCCGGATTTCCCGTG 3210739 29 100.0 32 ............................. GACGATCTGAGGGAGGCCATCGGCCACTACCT 3210678 29 100.0 32 ............................. GCCGCCTGGAACGTCCAGTCCCACGCCCGGAT 3210617 29 96.6 32 .......T..................... ACGACGCCCTTCGACTTGAGGGCGGCCCAGTC 3210556 28 96.6 32 .....-....................... CACGATCTGTTCGTGCGCTACCGGCGGAAGCT 3210496 29 100.0 32 ............................. TCCGTCGACCGGAGCGGCCTCGAGGGCGGCGT 3210435 29 100.0 32 ............................. GACGCTCAGTCGGACATCGGCTCTCGGGCCGG 3210374 29 96.6 33 ..............T.............. CGAAGCAGGCCCGGCGCCTCCTTGCCGGGGTCA 3210312 29 100.0 32 ............................. GAGGGACGCCCAGCCCTCCCGGGCGAACAGAT 3210251 29 100.0 32 ............................. GAGCGCCGCGAGTTCCACCTCACCGGCGTGCT 3210190 29 100.0 33 ............................. ACCCGGCCACCGACGTCCAGGCGCACCGTCACC 3210128 28 82.8 0 ......G.T........A...G...-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.0 32 CTGCTCCCCGCGCCCGCGGGGTTGGTCCC # Left flank : GCGACCACGGCCACCACATCCCCGCGGGCATCAACCACGACGGCCCGGACGACCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCTGCGGGCCTGCGAGGGTTCCTCACCCGCTGGCTCCTCGAAATCTCCGCAGGTGTCTTCATCGGCAACCCATCCGCCCGCATCCGCGACGCACTCTGGGACGAAGTCCGCCAGTACGCGGGCCAAGGCCGTGCCCTCCTCGCCCACACCACCAACAACGAACAAGGATTCACTTTCCGCACCCATGACCACACCTGGCACCCCATCGACCACGAAGGCGCCGCCCTCATCCACCGCCCCGCCCCGAGCAACCCCACCCCCACGGAAAAGCCGTCAAAAGGCTGGAGCAAAGCCTCCAAACGTCGCCGCTACGGCGGATCTTGATCCTCACATGGGCTTTATGAACCATTCGCCGGAATTTGTGAAAGTTGCAGAGAAGCCCCGCGCCCCCGGCTAAAGCCGCAGGTCACGCAGT # Right flank : TCTCTGGTCACGACGGGCTTGCCTCCCGCGCGGGAAGGTGGGCGGAAGCGTCCCGGCTCACGGCAGACCAGGCCGCGCTCACTCAACGGCTCGTTGATGAGCGGGGGAAGACCATCCAGCAGACGTCGGCATGTCCGGCGTCCCGCCGTCGACGGTGTACGGGTGCCTCGACAAGACCAAGTCCGTGCCCCGTCAGCTCAAGAAGATCGTGGCCACGAAGCTCTGAACGTTACTTCACACCCGGGTCAGAGATAGGGGTCCGGGAGCCGAGCAGGCGCTTGGCAGCTTTCGCCTTGCTGCGAGCTGCGCCTGATCTTTTCGGCGGCAGGACGCGTCGTGCTGCGCCTCCGGGGGTCCGCCTCGCGTGCCAGCCGCACATGCTGAATAGAAAATTCCGTTTAGGGATCACCAAGAAATCCAAAACGGGGCACAATGGGATGTTTCTGTGCGTGCTGAAAAATCGCCATGGTTCGCCACCCCTCCAATCTCCGGCAAAGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3222021-3224001 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029078.1 Streptomyces griseoviridis strain K61 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3222021 29 100.0 32 ............................. TCCTACTGGCACGCGGGGCCGCGTATGCCAAG 3222082 29 100.0 32 ............................. CCGCCCAATACTGCGAGGAGTACCGCTCCCGC 3222143 29 100.0 32 ............................. CGGAGCACTCCACTTCGACGAACTCGAACTCA 3222204 29 100.0 32 ............................. ATCGGCAGCAGATCCACGCCAGCCGGGATTGC 3222265 29 100.0 32 ............................. CGCCCGCGTGCCGTAGGTCGGGGAGTTCGACG 3222326 29 100.0 32 ............................. CTGTCCCAGCCGGACGTGTGCGGACGCTCGGG 3222387 29 100.0 32 ............................. CCCGCCGCCTGGGGCAACAAGCGCAAGGGGTA 3222448 29 100.0 32 ............................. GGCACCGACGGGAACTCCCGCTTCTACGGGGT 3222509 29 100.0 32 ............................. AGTGGGCCGATCTGTGTCATCGACCCCCTGTT 3222570 29 100.0 32 ............................. TGGAGGGAGAACTCCAGCACCGTCGCCGTCAG 3222631 29 100.0 32 ............................. TTGCCCGACTCCGAGCGCTCCACCTCCCGCAT 3222692 29 100.0 32 ............................. GGGAAGACCCTCGACGTCGGGAGCGAGAAGGG 3222753 29 100.0 32 ............................. CAGATAGCCACTGATCAGCCCCCATGCATGAG 3222814 29 100.0 32 ............................. GCCCCGCCGCTGCGCGCCTTCCCGTGGTTCAT 3222875 29 100.0 32 ............................. TCCCTCCTCGAGCACGCCCGCGCCGCGGCTGC 3222936 29 100.0 32 ............................. GTGGCCCTACGCGAGGCCGAACGCAACGGCAT 3222997 29 100.0 32 ............................. GACATCCCAGCCTCGCCGGTGCCGCCCTCGCC 3223058 29 100.0 32 ............................. GGCCGGAGACGATCGCACCCAGCAGGGTGGCG 3223119 29 100.0 32 ............................. GGCCCGAACCGCACGCCGACGCGGAACCCGGG 3223180 29 100.0 32 ............................. CCGCACGCGCGAATTCCTGTTCCACGGCGCTC 3223241 29 100.0 32 ............................. GCCTCGACGCCTGTGTGGCCGGCATCGAGCTG 3223302 29 100.0 32 ............................. CACAAGGGTCCCGCCCGTCTCGTCAGACTCAA 3223363 29 100.0 32 ............................. GACCCGCTGCCGCCTCGCCCGGACCTGCCCGG 3223424 29 100.0 32 ............................. GGCATGGTCGGCGGACATGCGGCAGCACTCGC 3223485 29 100.0 32 ............................. AGGCCCGACAGGCGGCGCTCGGTGTCGGGGGA 3223546 29 100.0 32 ............................. ACCTCGACCGCCGTGCGGCGGCCGGTGAGCTG 3223607 29 100.0 32 ............................. GGCCGCTCGGTGAACCACATTGCGTGGAAGTG 3223668 29 100.0 32 ............................. GGCGGCGCACCTCTGGCACTTTTGACCGAGGG 3223729 29 100.0 32 ............................. GCGCTGTCCCGGGAGCGCTGGCCCTCGGACGC 3223790 29 100.0 32 ............................. GTCGACCCGGGGCGACACAGGCAGTACCGCGC 3223851 29 100.0 32 ............................. GGACCGTTGTCAGCGCCAAGAAAGCCGGGGGG 3223912 29 100.0 32 ............................. AGGTCCGGGGCCACGCCGGAGTTGCGCGAGTC 3223973 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 CTGCTCCCCGCACCCGCGGGGTTGATCCC # Left flank : CCGGAGTCGCCTTGCCGATGTCATGCACACCAGCCAGCCACACCACCAGGGCACGCGCATCCGCCTCCCCCTGCGGCAACTCCCCGGCGATCAGCCTGCGCACACTGAGAGGAAGCCACCGGTCCCACAACAGACCCGCGACGGCAGCGGCGTCCTCCATGTGCCGCCACAACGGCAGCCACCCGTCCCCGTCACGGTCATGCTTCGCCCACACCGAACGAGCCGGTCCCCCCAACCGCTCCAGAAGCCCGGAACGGACAACCCCCCCTGCGTTCATGGCCAATTGATACACGCGCCCGACGACATGACGCGCCGAATTCCCCGAAGTCGGTCACACCAGGCCGCAGAGGGCGGCTCACGCTGTAAAGTGCCACCTTTGCTTGCCGCTCGAGCGCGGACCCAACAGAGCCCTGGAAAAGTCAAATATGTCTCTTTTGCCGGAATCTTTACAAGTAGCAGAAACAAGGCTGCCACACCAGTAAACCCGCTGGTCAAGGAGA # Right flank : TGTCGTTTAACGTCCGGCTTCGAACAAGCGGGCCCCGTAATGGCAGGCTGTGGTCGTGAGGATCGCGAGAGACGACCAGCCAAGGCCGCTGTCGACATGCTGGCTCTGCTGGATCGCCGTACCGACCGGGGAACAAGCGGGAGTCATTGCGTCCCTGGGTCTCACCCGGCCCGTACCCGTGACGTTCGCCGAGGCCGTGGCTGTCATCGACGAGGACGGCCACGGAGAGGCCGAGGACAATCCGGACGGACTGGCCCGGGTGTACGTGAGCCCCGAGCTCGAGGGATGGACTCTGGTGATCGGCCCGTGGTGCGATCCGTGCAACACCGACAGAAGTGACGAGGTCCTGCGCCTGTGCGTCGACCTCAGCTCCCGCTACGGAGGGGCGCAGGCGTACTACTTCGGTACACAGAACGACGGCTCGGCCTGGCTGATCGCAGAGCACGGGGTGGTGGTGCGGCGCTACTGCGAGACCGGCCAGGTCGACGACGGACTCCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4626499-4626353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029078.1 Streptomyces griseoviridis strain K61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 4626498 24 91.7 37 ...TT................... CAAGCGAGAGCTGGCCGCCGGATTCGCGGAGATCTGG 4626437 24 95.8 37 ..T..................... TCCCGGTTCGTCCAGCAGCTCGTGGTAGCAGGGCTGG 4626376 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 95.8 38 TCCCCGCACGCGCGGGGGTGATCC # Left flank : GACCTTACCCGCGCGCTCATGGCCGAGCACTTCCTGAGCCACCGCCTCGGGCACACCGCTGGCGTGCAACCGAGAGGCGTACGTGTGCCGCTGATCATGAAAGGCGGGCCACCACTGCTTCTTGACTTTCTCCTGCATCATCGGTCGCCCGGTCTCCGGGTTGGTCACTTCCACCTTGATCTTCTTCTTCCGGACGCGCGCGACGCCTGCCGTCTGGATCGCCTTGATCCACTGCCGGTAGTAGATCGCGGTCGCGCGCGGACCGAACGGACCGACTGCTCGGCTTGGCGCTCGATCACATCAGCGCGCAGCACGAGCAGCTCCGGGCGGCGGGGCTGCCGCTGATACCGATGGACCCCGAGCTGGTCGCCGCGCGTGACTCGCGCTGAACTGCCCCTTGCCCCCTTCCGCCTACGGGCGGGAGGGGGCTTTTTCTGTCTCTGGCAAAGTTGCCGCAGCCGCGCACTGTGCACGGTAGCGTCGCTGGTCAGGAAGACTGG # Right flank : GCAGGACGCGCGACTCCCGCTGGCACTGCCCCGCTTCCGCCTTCGGGCGGAAGGGGGCCTTCGTCATGCCCTGGGTCACTTCCCGAGAGGCACCGTGGCGTAGGACGTCCACTCGTACATCTGGGCGTCACGGCCGAGGACGATCAGCTCCGCGCTGGTGATGCGGGCCCGAGCGGAGGTGAATGTGGCTCGCGCGAGGGCGTGGACGACAGGGTCGGCTGGCCCTGCTGCTGCGCTGTACGCGACCGACACGTGCGGTCGAAACCCGTCGGCCTGCTCGGGAACCTCCTCCACCACGTCGCCGATCGCCGCGCGGATCGCGTCCCTCACCGCGTGCACTGGCTCGGCAGGCTGTGCGGGCAGGAGGATCGCCTCCTGGTCGACGACGGCGTCGGGCCCGAGGGTCACGTCGAACGCGGCTATCCCCGCCAGCCGGTGGCGGGCGGTGGTGACGATGGCGTCGACCGTCTGCGCGTCGGTCTCGTCCACGAAACCAACGC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACGCGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 7112292-7112019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029078.1 Streptomyces griseoviridis strain K61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7112291 29 100.0 32 ............................. TAGACCAGTCCGTCACGGGCGGGCGCGGCATC 7112230 29 96.6 32 ............................T GGAGGGGAGATCGTCCGGCGCCAGGGGCGGGC 7112169 29 100.0 32 ............................. TGGGCGGACAACGCGACTGAGGGGATCGGCAT 7112108 29 100.0 32 ............................. AGACCCTGCGACGGCTGCCGCAGAGGACCGGA 7112047 29 89.7 0 .....................AA.....C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCGGCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CGTGGTGGTGCCCGGCATCTGCGTCCAGTCGTGGTTCCGCAGCAGGTTTTCGTCGTGTCCGCCGCCCGCGTCTTCGCCCCGCCCCGTACACCCGGCCGCCACCGCCATGACGAGCGCAACGGCGGTCAGTCGCTGCCACGTCCCCCCACCAAGGTCCACGGTCCCTCACATTCTCTTGTTCGAGACGCGATCAACGTCTTGAATCCGGGCCATAGTTCATCACGCGGGAGGTACGGCGGCCTTGTGCGGTCCGTCCCAGCCCGGGTGGCGGGCGGGGCCGGACCGTTGCGGCCTGCGCGGGCGACGCCGGCCGCACCTCGGGCCGACCTTCCGGGGAGAGCGTCACGAGAAGGGACGCTCAGGCCCATGCCTGCGGTCTCCTGTGGTTGACTCAGCGAGCGGCGACGCTCCGCATCAGACCGCCAACCTGATTCTGCGAGACCCCGACGCAACTGAATGAAAATCCGCAGCACCTGACCTAACCCAGCAGCTCAGCAAGC # Right flank : ACTCCACTCAGCCCCCAGATCACCCCCGCCCCATCACCACCGCCCCCCGGACCCCCTCCTCCCCCACTCTCGACATTCCGTCCAGCGACTCGTCAGGTACCGGCAGCAAGTGGGCGTCCACCCACGTGTCCCCCGTCTTCGGGTTGGACCACGGGTCCTCGATCACGATGGCTCCCGGTACCGTCCCGTGGCACGCCACCCAGTGCGGTACCTCGAAGCCCTGCATCGCGGCCAGTGAGATCAGCAGCAGCACATGGTCCCGTCGCTCAAGCGCGCCGCGGATCGTCTCGATCGTGAGGTGGCCGGGGTCGATCGGGACGCCGAGGCGGTCGGCGTCCGCGCGGGACGCTCGTTGGAGTACCGCGCGCCACTCCCGTTCGTTCTCCTGGAGATGGTCGAGCAGGACGGGCCGGTCCGTGTCCAGGTGGATCGTCACCGGGGACGACGGCCAATTCCGGCGTACCGCGACCCCCAGGCCGACCGGCTCGCACGCCGGGAAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 7119991-7119291 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029078.1 Streptomyces griseoviridis strain K61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7119990 29 100.0 32 ............................. CAGGAGTCCGGTGAGCACAACGCGCTCGCCGA 7119929 29 96.6 32 ............................C TCCGGCACCGGCGGCACCCGGCTCGGGTTCAT 7119868 29 96.6 32 ............................C TCCTCGACAGCCGCGGCGTCGGATGCACCAGC 7119807 29 100.0 32 ............................. GCGTCCGACGATCGCGCCCGCCAGACCACGGT 7119746 29 100.0 32 ............................. CTGGCCAGCCGCCTGGCACGTGAGGACGAGTA 7119685 29 100.0 32 ............................. GACAGCACGGACCGTCTTGGCCGAGAAGCCGG 7119624 29 93.1 32 ....A.......................C GCGGGCTGAGGAGGCACTCTTGGCGATCCCCG 7119563 29 93.1 32 .......TT.................... CCGCGCGGCCTGCACAACATCGCCGACCAGCC 7119502 29 96.6 32 .......T..................... GTGATCATGCCGTCGTCGCCGCGCTGCGGGTC 7119441 29 96.6 32 ............................C CGGGCTGTGCAGCTCCTCGACCCCGACTCACT 7119380 29 100.0 32 ............................. ACGGGCATCGGCCCCGTACTGGGCATCACCAC 7119319 29 79.3 0 .....................TACCC.A. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.0 32 GTCGGCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : GGATCAAGGTTCGTAGCGCACGCGTGCGTGCTGTTCCGGGCACGTGGTCCCGGGCCCCGCAATGGGTGCAGCTCAGCCGCTCGACGATCACGACCTCGCGGGAAGAAGACGTGAACCTGGGAGGACTACGCCCCGCAACCTCGGAGGTCCACAGGCCCAGACCGTGCCGCATTCCTCGGTGCCGACAACCACCTCGTCGCCGGTACGCCCGGCTGACCGCCCGTTCGGCAACTGGACCCGCCAGGAGTTGGACGTCGACGAGACCCTGCCCATCGCGGACCCCTCCAGCCAGGGCGCAGTGGTGTCTGTGACCGAGAGGCGGCAGGCAGGCCATCCCCGCCGTCTCCTATGGCTGGCTGAGGGAGAGTCGGTAACGTTGGCGCAGCACCTCGGGACGAGTTGCACTCTGCCAATCCCCAACAGCACTCCGAGGTTGCGAACCCACGTTGCACCTAAACGAAAACCTGCCCCACCCGAACTAACACCCCAGCTCAGCAAGC # Right flank : TCCAGGTCCGCCGCATGGGCAACGGGTCGTCGGAAGGCGTTCGTCGGCCGCATGCCTCGCCGCCGGCTCACCGTAGTGAGTGCGGTCGGACCGGGCCAGAAACGGGAGGCACCCGGCGAAGTGGGGCCCGGCCAAAGTTCTGGTGTGCCTGCCGTCCCACGCGGATCAGCGTTAAGGCGATCCCCGAACTGACTGCAGGTCAGGCAGCGTCGGGCGCGCCCGGGGAGGTGCTCCACATCCGCTTCTGCTCGCCTGGCCGCAAGTACGAGACCGCGCCCTGCGACACGCGTCTACTCAGTCGATCCGGCTCAGCCCAGAGTGCCCACCACAGCCCAGCTCCCTCCGCCGGAAGGGCGGGGCCGTTTCGTCACGTCGTGATCGCGGCGAGTGCACGGCTCGTGTCTGACAGGTCATCGAGTACCACGTCAGCCGCTCGCAGGTCGGCGGCCGGAGTGCGGCCGGTGGCGACGGCGATCACGCGTACCCCGGTAGCTCGGCCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 7122691-7122235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029078.1 Streptomyces griseoviridis strain K61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7122690 29 100.0 32 ............................. CTTGAGGGCGTCACCCCGCCGAACGGCGTGGA 7122629 29 100.0 32 ............................. CCCTTCTCGACCATGATCATGCGGTCGGGGTT 7122568 29 100.0 32 ............................. ACCACGCCCGCCGAGGCTGCCCCGACCGCCGC 7122507 29 96.6 32 ............................T GGCGTGGCGACGCTCGCACCGAGCTGGGGCAC 7122446 29 93.1 31 ..T.........................C GTCGGATCGACGGACCCTGATCGCTGGGGCT 7122386 29 96.6 32 .......T..................... TACGTGGGCCCGGTGGCCCACGGCATGGGCGT 7122325 29 93.1 32 ..............G.............C GCGAGCGCCTCGTTCAACGTGGACTGGCCGTA G [7122314] 7122263 29 86.2 0 ..............G........A.CT.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GTCGGCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : GGTCCGCAGGGCTGTACACGCACTGGCGGCGGCACTCGCGTAGGGCTGCGGGGGGGGGAGGGAGGTGAGGGTGGTCGGGGGGAGCGTGTAGGGCGGGCTGGTGTGGATGGTGGGGGTGTGGGGTGGGGTGTGGGGTGTGGGCTGGTCGGGGCGCTGTTGTCTGGGGGGCGGGGCCTCTATGTCGTTGGGGCGGGTGGGTGAGGGGTGCTCGGCGAGTGCAACGGCTGCTGGCCGTAAGGGGAGTTGCACGTTGGACGGGGCTCCCGACCGTTTCAGACGCCTCTAGTCAGAGTGCGGTAGCGGCGTTGGCCCGGAGGGGATGGGCAGGACTTTCTCTGCCGTCTCCTGTGGGCGACTGCGCGAGTGTCGGTAGCGTTGGCGTCATGCCTCGGGACGAGTTGCACTCTTGCCGGTTCACAACAGCATCCCGAGGTTGCGAAGCTGCGTTGCTTCTGAACGAAAACTTGCCTTACTTGCGCTAACACCACAGGTCAGCGAGT # Right flank : CCGCTGCGCCCACTCCCTGCGGGCGGGAGCGTCGCTGGTCGGAAGGGCTGGTCCCCTCATACGCGGGGGTGATCCCAGCGCCGCCTCAGCGGGCGCCCCGGCGTTTGCCTGGTTCCGGGCCACACCCGCAGCCCAGAAGCCTCCCCGCTCAAGGTGGGCGTCGCTTCCGGAGGGTCGCCGCAGCCGGTCAGACGGCGGGCGCGCCCTGCTCCCAGTGCGCCGCCGCCCACTCTTCGTACGGCTCCGCCGACGAGCCCCTCCAAGTCACGGGCACCGTCAGGGTGGCCGGGTTCTGCCGCGAGTGGCCGATCGTCACCTGGAATGGGGTAGCGCGACCGTCATGCATCACCCCCGTAACGAAATGATCCACTTCCTTGTGCGGGCCGTGTCCACGCCCGTGGAGTGGGCTGATGCAGTTTCCGACAGCAGGCGGTCCGTTCTTCCGCCGCGTGCGCATGTGGCACGCCGTGGCGGCCTCCCTCGTAGTGGTGGCGGTGGTC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //