Array 1 153495-154561 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP075291.1 Klebsiella pneumoniae strain RGT3-2 plasmid pRGT3-2-tmexCD-incom map unlocalized		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    153495	    29	  93.1	    32	............TG...............	TAACTTTACCCCGGATCCTGATGAACCTGTAC	
    153556	    29	  93.1	    32	............TG...............	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
    153617	    29	 100.0	    32	.............................	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
    153678	    29	 100.0	    32	.............................	GCACCCTCACGGATACCTTTTGCACAGTGTTA	
    153739	    29	  93.1	    32	............TG...............	TTACCAATGGGGAAAAATCTTCATTTGTAAAT	
    153800	    29	  96.6	    32	.....T.......................	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
    153861	    29	  93.1	    32	............TG...............	CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG	
    153922	    29	 100.0	    32	.............................	AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC	
    153983	    29	 100.0	    32	.............................	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
    154044	    29	  93.1	    32	............TG...............	TTAATGTTTTGTTAATTTATGAGTGTGGTGAT	
    154105	    29	  93.1	    32	............AC...............	AGCAAATCGAAAATCCGGCTGTTTGAAAAATG	C [154110]
    154167	    29	  89.7	    32	.............T.A............C	CATGAGCCTGCGCACTCTGACGCGCACCTGCT	C [154172]
    154229	    29	 100.0	    32	.............................	TGAGGCTGCTGACGGAGAATTGGGACCTGTTC	C [154234]
    154291	    29	  96.6	    32	..............C..............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
    154352	    29	  93.1	    31	.............G.A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
    154412	    29	  93.1	    32	...C......................T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
    154473	    29	  96.6	    32	.............T...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
    154534	    28	  86.2	     0	..........A.....T.....-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        18	    29	  95.0	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA

# Questionable array : NO	 Score: 5.42
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   GTATTCCCCCCGTGTGCGGGGGTTATCGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [3-15] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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