Array 1 305575-303271 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPK01000001.1 Aggregatibacter segnis strain C2000002669 C2000002669_S1_ctg_750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================== ================== 305574 28 100.0 32 ............................ TCCTCGCCTGATTGCGTTGCATAAATATCTTT 305514 28 100.0 33 ............................ CTTTGTTTGAAATGGAGGTATGCCAACCATATT 305453 28 100.0 32 ............................ TTGCTCTTGGTGAGTATGGTTCAGCAAACTGA 305393 28 100.0 32 ............................ TTAGGGCAAATCCAAGCGTCTTACGGTGGCGA 305333 28 100.0 32 ............................ AGTTACTAAACGGATAACAGGGAGATTCCCAC 305273 28 100.0 32 ............................ TAAAGTTGAACTTACACTACTTAACCGTAATT 305213 28 100.0 32 ............................ TATTAGCAAGACGTTATCCGGCAAACAAGTAA 305153 28 100.0 32 ............................ TTACTGTTTTATCTGTCATTGATTTATTCATA 305093 28 100.0 32 ............................ ACCGTCAAAACTACCCCACTATCCGCAAGCAT 305033 28 100.0 32 ............................ AAAAGGCTTACGCCTCTCTTCAAAAATCTTAA 304973 28 100.0 32 ............................ AAAAACAACACGGGCTAACCCCAACAGAAAAA 304913 28 100.0 32 ............................ TTCGAATCGGCGATTTTTTTCGCGATTTCGTC 304853 28 100.0 32 ............................ TAGTTTCTGTTTAAGTTTCTCAAATTCGACAA 304793 28 100.0 32 ............................ ACCTCTAAAATGGCATTGCGCGGCGGTATGTC 304733 28 100.0 32 ............................ GTAACGACGGAGCAATTTAATCAGTTGCAAAA 304673 28 100.0 32 ............................ AATAGGCGCGCACGGCTTTGTAGTTGTTGTTT 304613 28 100.0 32 ............................ ATCAGGGCACAGCCGCCCGCCGTCGCGCATTT 304553 28 100.0 32 ............................ AATCTGCGCAATTCGCGCCATACGGACACGGA 304493 28 100.0 32 ............................ ATTGGAACTAATACACTTAACAATGCAATTAA 304433 28 100.0 32 ............................ AAACTGGTGACCGATCGCATCATGAGCATGCG 304373 28 100.0 32 ............................ ATCATCAAAGCAGACTCTGATGTCATCTGCGA 304313 28 100.0 32 ............................ TAATTTATTCATCATATCGCCTGTTAGCGATT 304253 28 100.0 32 ............................ TTGACCCTAACGCCTCAATGGATAGTGTGATT 304193 28 100.0 32 ............................ TTTTTGCTGCATATCCTTATGAGTTGCCAGCC 304133 28 100.0 32 ............................ TATCAAGTTTTGTAACTACAACTGTATCGCCC 304073 28 100.0 32 ............................ TAAAGGCCGAGAACCAAGCTCAAGCCCAAACC 304013 28 100.0 32 ............................ AAAAGAAGCCACAATCAACCGCGAACACGCCT 303953 28 100.0 32 ............................ TGACCGCCCCACATCAAAAGCGCCATTGCCGC 303893 28 100.0 32 ............................ AACCTGCGCTCAAGCTATCAGGCGGGCAGGTA 303833 28 100.0 32 ............................ CAATCCGCCTTTGATGCGTTCTTTCCACGCTT 303773 28 100.0 32 ............................ AAGTGAAAAAATCTCAACCAATCAGGGGGATA 303713 28 100.0 33 ............................ CACATAAACAATAGCTAATGCTGCAGCAGCGGT 303652 28 100.0 32 ............................ CAGGTATTCCTACATATGCAGATATAGCCATA 303592 28 100.0 32 ............................ ACAATCTCATTATTAAACGGATAGCCGTTATT 303532 28 100.0 32 ............................ AGTCGTATTTACAGCCCAAAGTGCGGTTAAAA 303472 27 89.3 143 ....................A.A.-... CGCCTAAAAAACTGACCGCACTTTTTCTCACAACAAAATCAAAGATGCTAAAGCTACATGTTTAATGTCTGAAAAGTAAGTTTATTGCTATAATCATAAACCTACTGAACAAGTAGCTTAGAAAATAGGTGTTTATTTGAAAC 303302 28 85.7 0 T..A.............T......T... | T,A,GA [303273,303278,303281] ========== ====== ====== ====== ============================ =============================================================================================================================================== ================== 37 28 99.3 35 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CATTGGCACGTCGTAACGACGAAAACCCGGAAGTCACCGATCGCTTTGAACTCTTCATCGGTGGACGCGAAATCGGTAACGGTTTCTCCGAGCTTAACGATGCGGAAGATCAAAATGAACGCTTTGACGCTCAAGTGGCAGCCAAAGAAGCCGGCGATGACGAAGCGATGTTCAAAGACGAAGATTTCGTTGTCGCCCTTGAACACGGTTTACCACCAACAGCCGGCGAAGGCTTAGGTATCGACCGTCTCGCCATGCTTTACGCCAACGCCCCATCTATCCGCGATGTGATTTTATTCCCGGCAATGCGTCAGAAATAATCAAAATCAAATCATCCAAAAAAGGAAGTCATTCGACTTCCTTTTTATTTACCCTTTATTTTTACAGTTTAATCCCTCCTTCAAAATCAATGATTTAAACACGCAAGATATAAAAAGGATTTTATTGCCTAAATATGTCTATAAGCTTGGTACATCAGGTATTTTCAATTAGAATGTCTA # Right flank : TAAATATAAATAATTTCGTGATCTCACTCACAACTTTAAAATCACATGGTTGTTTATCGATATATTAAGCATACAATAAATTCATAAAATAAACTCCTATGGACAAATACCATGATAACTAAAACAAGCATAGTAAAAACTATCCGACAATTTCTTGTTGAACAAAATCATAAGAAATCAGAAGCCGATAGGAAAAAACTAGAAAATGCCAATCTTTCAGATAAAGAGGAATTACTAAAAAAAATTGCCGACTATGACGAAAAGTATCGTTTTGATGTTTGGATTCCAAATGCGGCGCTTGTTTTAGCAAAACAGCTTTATTTTGGAACGCATATTTCTCGAGGCATTCATTCTTCCTCAAAAGGAGACAACGTAAATTTTCAATCTGCTCCAACGCTTCCTCCTGAACTTGTCGGTTCGCAATTAATCCCAAAATTAGAACTTGATGCAAATGGAAACGCGGCGGCACTTCCTTTGGCCGGTTTCTTTAATATTATTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //