Array 1 42-866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWM010000015.1 Listeria innocua strain FSL L7-0794 NODE_15_length_6079_cov_235.564312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 29 .................................... AAATCACGAAATAATTTTGACTAAAGTCG 107 36 100.0 30 .................................... TCATTCTTTTTCAAAAGTTGGTGGGCAAGT 173 36 100.0 30 .................................... TCCCAAAATTTGACGGTGTCTTTGATCCAT 239 36 100.0 30 .................................... GAAGTGAAAAAGGATGTCACGCTTCGTGGC 305 36 100.0 30 .................................... GCTCTTTAAGCTCTTCGCTCGCTCTTTCCT 371 36 100.0 30 .................................... AACATGAACTCATAGAAGGTCAACGTTGCA 437 36 100.0 30 .................................... TAGCTTTGCGTTCATCTTGCTCATCAGCAA 503 36 100.0 30 .................................... AAGCAGCGGGAGAGAACATCTCTAAAGCTG 569 36 100.0 30 .................................... GACACGCGAAGGGAGAACAGTAGTAGATTA 635 36 100.0 29 .................................... TTGGCACGTATTACCTACTAGTATATGAG 700 36 100.0 30 .................................... ACCCGCAACAGTGTATCGTTCATCAGAAAT 766 36 100.0 30 .................................... AAAATAGAAAATATTTGTAATAGTGGTGTA 832 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAGG # Right flank : CACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGACCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACCACTACATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAAATTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGGAATTACCGTTAAAAGGCGAAGAGCAAAATAATGAGTATGAATCTAATAGTTTGAAAATACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACTTTTACATATATCACTTAAAATAAAAAGGAGCCTCCATTCATGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 284299-284583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWM010000001.1 Listeria innocua strain FSL L7-0794 NODE_1_length_605019_cov_188.144528, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 284299 29 100.0 36 ............................. GGCGTAGATTTATCCCATCGTCTAATTGTTCCATTC 284364 29 100.0 35 ............................. AATCAAGGCTGGTACTACACAGCTGACTATTTCTT 284428 29 96.6 35 ..............T.............. AAGCTATATAAAATCAAATCTAAGGAGCTATCGCC 284492 29 100.0 34 ............................. CTCCAATCTTGATGTTTTTTAATCGTATTTTTCG 284555 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 99.3 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : TACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCGACTAGTAGAGTTGCTGTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAGCGTAAAAACACCCGAGACCGACAGAAAGTGTGAATGCCTGGAGAAAGCGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTGGAACAGTTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACG # Right flank : TGTAGGAAGCGGCTTTAAAGAAATTATTAAATAACCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTTCTCGCAGTTTTATTCTATGGGTGTTCATCACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAAATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGGTGACGATAAAATAAGTTCTATAGTTAGCATGGGTTATGGTAAATTCAGTGAAAAGCTCCAAGAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 284043-283413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWM010000005.1 Listeria innocua strain FSL L7-0794 NODE_5_length_285827_cov_146.343741, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 284042 36 100.0 30 .................................... TTTTTTGAGAAGATTCTTACAAGTTTTTCG 283976 36 100.0 30 .................................... ACGCCCATCCCCGGTAGGCTCATATCTATC 283910 36 100.0 30 .................................... TTTTCAAATGCATGTGTGTAAACGATGTAC 283844 36 100.0 30 .................................... GTGGCTTAATCGCTTCCCAAATTGCGCTTA 283778 36 100.0 30 .................................... AAGACATAGAGACATTGTGATAAAAGAAAT 283712 36 100.0 30 .................................... AATTACTGATGCTCAGATAGCGGAAAGCCT 283646 36 100.0 30 .................................... AAACTAAAGATACTTACATGAGCGGGAGAA 283580 36 91.7 30 ..C.........A............A.......... ACATTACCCCCTGTTATCGGAAGCGTAGTT 283514 36 97.2 30 ............A....................... CTTCTTTATAAGCGATAGTTGCACCACGAA 283448 36 91.7 0 ............A.............T.G....... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG # Right flank : CAGATGCAAGTTTATGTGATTTATTAAAAAGGAACTAGTTAAGAAATTGAAATATAAAATGATACAGGATTCACGAGGTAATTCAAAAGAAGAAGCTGTTTTATGACTAGTGCCCAGTTTTTGGATGTATTTCTCTGCTCATTTCGCGTGCAGATGCTTTACGCGTAGATAAGCTATTTTTAGTACGGTATTTTCCTGTGGGAAGGTCTCTTTCTTCGTGGCAATCATAGAAGTCAGCAGTTGTTCGATTTGATAGAGGATTAAAGAGTATCTTGCTTCGTTTGCAGCATGACTAAGTGTTGTTTTTTGCCCTTCTGAATAAAGTGTGTCGCGATAATCTGACTGGAAACGACGATTTTCAATTCATTAAGATAGTGTTGCGCGATTGCTTTTCATTCAAAATTATATTTGTCTACGGTTTGTTTTGCGGTAATATCGTAGTCATAAAATCTTCGTAGTAGTTGTAATTGTGTCTATTTCACAGCGATAATCAGAAGTAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //