Array 1 53694-54699 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOQ01000013.1 Listeria monocytogenes strain NRRL B-33571 PROKKA_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 53694 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 53760 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 53825 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 53889 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 53955 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 54020 29 100.0 36 ............................. CTTCCTACTTTTTGACATGAAAAATAAGCCGAGTTG 54085 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 54150 29 100.0 37 ............................. GTCTTTGCATTTGATGATGATTACTTTTTTAAAGTCT 54216 29 100.0 35 ............................. ACGAGTATCAGCGCTAAAAGAGATTGTTAAGCGCC 54280 29 100.0 36 ............................. TTAAGAACATAAGCTTCACTCTTTAAAGGGAGTAAA 54345 29 100.0 37 ............................. AGTATCGCCTTCGCTAGGCGTTTCGGGCGGCGTTTCC 54411 29 100.0 36 ............................. ACTTTAGAGAAAGAAAAACAAGAAAAAGTAAAACTG 54476 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 54541 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 54606 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 54671 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1-740 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOQ01000019.1 Listeria monocytogenes strain NRRL B-33571 PROKKA_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 66 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 131 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 196 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 259 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 322 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 388 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 451 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 516 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 582 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 647 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 711 29 93.1 0 .......................A....C | C [734] ========== ====== ====== ====== ============================= ===================================== ================== 12 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : | # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1159-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOQ01000022.1 Listeria monocytogenes strain NRRL B-33571 PROKKA_contig000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1158 36 100.0 30 .................................... AAATCCAAAATCAACCGCGCACTCCATTTC 1092 36 100.0 30 .................................... AATAAATTGTTCCCAGAGAAGTTTGAAGCT 1026 36 100.0 30 .................................... GAATAAATCTCGTACTACATCTTCATAAAA 960 36 100.0 30 .................................... CTTACGTCCGTTTGATTCCGACACTAAACT 894 36 100.0 30 .................................... AAGCTAGATTTAAAAAATCTACGAGATCGT 828 36 100.0 30 .................................... TTCCAAAATGTGCTCTGAAACCTTTTCACC 762 36 100.0 30 .................................... TGGTTCGGAACCTCTAGAGCCTTGTCCTCT 696 36 100.0 30 .................................... TCGTAACCGCCTTTCTGGGAGTGATTGTAT 630 36 100.0 30 .................................... CAGTAGCCTTTCCAATTAGACTTCGAAATG 564 36 100.0 30 .................................... AATACCGCAGAGAATATGACGCACCCGCTT 498 36 100.0 30 .................................... TAGCCAAAGAAGCAGAATTGCATTTATTCC 432 36 100.0 30 .................................... TGGGTTGTTGATCAAACGCCACAAATAACT 366 36 100.0 30 .................................... ATAACTTTGCAATATTAAACATCAGTGTTA 300 36 100.0 30 .................................... GCCACCGCCAAGACTACTACTAGGATTTAC 234 36 100.0 30 .................................... ACCACAAAAGACACAGTTATGAAGATTACT 168 36 97.2 30 .........A.......................... AAGCACAGCCATCCAGTGACCCAGAACGTT 102 36 100.0 30 .................................... AAGAAAAAGCGATAATGCGTGATGAAATCA 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1007-1604 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOQ01000021.1 Listeria monocytogenes strain NRRL B-33571 PROKKA_contig000021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================================ ================== 1007 41 95.1 48 .......................................NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1096 41 100.0 37 ......................................... GACTTACATCTAACTCTTCAAGTGATCTGCACTCAAA 1174 41 100.0 37 ......................................... GACTTACATCTAACTCTTCAAGGCTATTACAAGCAGC 1252 41 95.1 37 ..........AT............................. TACTTACATCCAATTTCTCAAGTGCTCTACAGGAACC 1330 40 80.5 37 .....-T.C..C.....C...T..T..........T..... TACTTACATCTAATTCTTTAAGACTGGTACTATTAAC C [1341] 1408 40 90.2 37 .....-T.C..C............................. TACTTACATCCAATTTTTCAAGTGCTTTACAGTCCCT C [1419] 1486 41 80.5 37 .....TAT.A.A.....C.T.C................... TACTTACATTCAATTTCTCAAGTGATTCACAGTATCC 1564 41 80.5 0 .....T.CTA.T.......T................C..G. | ========== ====== ====== ====== ========================================= ================================================ ================== 8 41 90.2 39 AAACAGGGACTGCATATTAGTAACGGAACTCGTATCAAAAT # Left flank : AAGGAAAAATCAAACTTATTAGTGAAATTTTGATCAAGATACCACCCGTCAAAGTAATGCCCTTCTTTTACTGGAATCACTTCTTCCCAGTATTCCCCAGAAATTTTACTTTGTACTTTTTGTTCCTCCGCGTCTTCAAATTCTCCACCCATCGCATCCATTGTTAAGGAAAGGAAGGTACCTTTTCTATAGCCAGTAGGTTCACTTTGATTTCGATGATAGGTCTGTAGTTGAGAGAGATTAGAAAACTGTACCCAATTCTTTTCATCATACCAGTTTGTATTTGCCAACCCATAAAAAGATTGTAAATTGTGACTGACAAACAAGTAGGCTAGGGAGGTTGTTCCAGTAAACATATCTGTCATGGTCTTTGCGGTAGTAAAATTATCCAGATATAAAGATTTTAACGCTGTACAATCTTTAAACATGGAAGCCATAGTAGTCACGGAACTAGTATCAAAGTTACTTAAATCTAGCTCTTCAAGTGATCTGCACTCAAA # Right flank : TTGCTTAAATCCAATTCCTCAAGTGTTCTACAGTTATAAAACATTTTCTTCATATTAGTTACTGCGCTAGTATCAAGACCACTCACATCAAACTCCGTAAGGTTGTAACAATTTTCAAACATACTTTCCGTAGTGAGTAAAGATGGTGCTGTCGGATAATCATTATCTCTAATGATAACTTTTTCAATTCCTGCACTAAAAAATGCTTCTCTAAAAGATGTTACTCCAGACAAATTAGAACGTTCAATTCTCACGCTCTCAAGCACTCTGAAACCATCTATTTTACTTTTAAAATAAGCTTCAAAACTTCCTGTCAAAGTAGCTTCTTCAATCTCTATATGTTTAATGTTACCCAAATAACTCTTCCAAGCGCTTGGTATACTACTTGGTACGTTGCCAAACATACGCAAGCTATATTCACCGTTCGCAGAATTATAATAAAGCGTCCAGTAAGCACCTGAGCTTACCACTGTTAAATCCGAATCATCCGAATCGGCAAC # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACAGGGACTGCATATTAGTAACGGAACTCGTATCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1-369 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOQ01000007.1 Listeria monocytogenes strain NRRL B-33571 PROKKA_contig000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AAGAAAAAGCGATAATGCGTGATGAAATCA 67 36 100.0 30 .................................... TAAAGCAACAATGAATGTGAGCGCGAGTAT 133 36 100.0 30 .................................... TGGATATAGGGGATATGCACAGGGTATGTG 199 36 100.0 30 .................................... TCATCGATGTGGATACAAACAAAGTCGATG 265 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 331 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [356,362,365] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //