Array 1 1549162-1550369 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVM01000001.1 Rothia dentocariosa strain NCTC10917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1549162 36 100.0 34 .................................... AGCCTAGAAGCAATGACCGTGCTGTGGGAAAAAG 1549232 36 100.0 37 .................................... CAGCACAAAACACAGGTCTTAGCGGCTAAATGGGCAG 1549305 36 100.0 37 .................................... GGAACAACTTTTTTGCCCGCGCGAATGATGCCCGCGC 1549378 36 100.0 37 .................................... ATTGAGGGTCAGAAAGGCTTACGGGACGCAATTCGCG 1549451 36 100.0 37 .................................... AGCGGTGACGGAGGCAGCAGAGTTAGCTGACACGTAT 1549524 36 100.0 39 .................................... GAGCCATCCGAAAAACAGCTCATTAAATTAGCGCAGCAG 1549599 36 100.0 37 .................................... ACTCGGTTGAGCAGTCTGCTGCATTATCTTTTCCTTC 1549672 36 100.0 37 .................................... AGAATCCGCAATAGACTGTATAGCGCCTGATACGTCA 1549745 36 100.0 37 .................................... AGAATCCGCAATAGACTGTATAGCGCCTGATACGTCA 1549818 36 100.0 36 .................................... TGGATACCTTGGGCGATGGAATCCAGTTTCTTGTTA 1549890 36 100.0 36 .................................... GCAGTAGCCAATAGAGATGTATCAAGGAGGTCTTGC 1549962 36 100.0 39 .................................... AGAGCAGGAACCTTACGGGCTGAACACTAAGTTCGCGGC 1550037 36 100.0 38 .................................... GCGAATTCAGACGGGCAGATGCTACTAATGTCGTAAGG 1550111 36 100.0 38 .................................... TGCGTATTCGACAACGTCGTGATACCACGATTACGATT 1550185 36 100.0 38 .................................... CACAGTTCCTTTAACGGCGTAACTGCCGCAGGGTTTAC 1550259 36 91.7 39 .............A.G.A.................. ACGTTGAGCATGCGGGTCTTCACGTCATGGCGGGCCCGT 1550334 36 80.6 0 ........TG......CA..............TT.A | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 98.4 37 GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Left flank : GGCGTCGCTTGAGAACGCTCTGCTGGAATTCCCCGGATGCGCCGTCGTCGTCTCCCACGACCGTTGGTTCCTCGACCGCGTGGCAACCCACATCCTCGCATGGGAAGGCACCGAAGAAAATCCGGATCAGTGGTACTGGTTCGAGGGTAACTTCGAGTCTTACGAGAAGAACAAGATCGAACGTCTGGGACCGGAAGCTGCGAAGCCGCACCGCGTGGTGCACCGCAAGCTTACTCGCTAGGTTAAGAAAGATAAATGCCCCGCTTGTCCGCTATTTCTGCCGGATGTGCGGGGTATTTTACTTTGGATTGTTTCGAGGAACGCGAGCACCTAGTACTTACCGAAAATCCTGGGTTTCGCTCGCGTGAATGAAACACCTTGTCAGAGTCGTTTTGTGTCTGAACGATTGCCTCCGATAGACTGAATAATATGAGCGCTTGTCCCTACGCTCGCGAAAGCGCCTGAGAGACCAGGAATTTACTGGATATTTTTTAGGTGCT # Right flank : ATACCTAAGATGGTTCCGAGGTGCTCAGAACCCAGGCTTAACACGAGAAATATGTAGGAAGAGAGATATGACGAAACATAAAGCATAGCTTCATAAATACTGATACTATAAAAAGTACAGAGTTGTTGGTTTACATTTGAAACTCACCTCAAAACCCACTTCTCTCAAAAGCATTTCGTGCGCTGCGTATAAAGCCTTTCAGACTTTATCGTAAACACAAGCAATATAAGTAGAACAATAGCGTTCTACATTAGGTTAGGAGAATTCCGTGTCAATTTCGGATAAAGCTAATATCAGCTTCGAAGATTTGAAGGAAGCATGTGCCGCTGGTGGTGCCTCAACCTTGGTTTCGGTAACAGAGCTTAAACCTGCTGCAGGAGAACATGCATCGATCGCTCCAGCTAAATTTATTGAGGACTCAAAGCCAGTATTCGCCTTCGAGACCCGATTTATTGATGGTAAAGCTGCCCGGGTGGTACTCATTGATAGTAAGCAATCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1557908-1558232 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVM01000001.1 Rothia dentocariosa strain NCTC10917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1557908 36 97.2 37 C................................... CAAAGCGCGAACAAAACTCCGTGCACGCGGTAAAAAT 1557981 36 100.0 36 .................................... ACCAAAGTTGCGGATGCCCTTTCGGATGCGGGTGTT 1558053 36 100.0 37 .................................... TATTGGCCGGATTACTATAACCGCGATCAGCCCGGCA 1558126 36 100.0 35 .................................... GACTACCCGAAATTCATGGGCATCACAAAGAAAAG 1558197 36 86.1 0 ............................GC.A.A.A | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.7 36 GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Left flank : AACCCTCAAATCACTGAAGCGAATCGCGTTCAGCTTGCCCTCCAAGGGATCTGCTTGGAAGAGTCAGGGGAAAGTGTTAGCGAATTTTCGGTACATTTTACCGATCATAACAAAACTATTGCGGTTGAGCTCTCTGAAGACGATTTTGCCCTAGCACGAGACTATGTAGAACAGACGCATAAGATCGTTGAATCTGAACATGCGCCAAAACCGTTAGAGGATTCTCCAAAGTGTAGCTGGTGTTCGCATGTCAGTGTTTGTTTGCCGGATGAACATTTTGGGCGTGCATCGACTCAGAAAATTGTGCCTTCAAAACCAGACAGTCAGGTTGCTCACCTAACTGTTCAAGGTTCACGTGCCACAATAAAACAGGGTAGACTGATTGTTCAGTCAAAAGGTGAACAGCTTGGCGATATCCCCCTAGAGAGAATCCACAGTGTAGTAGTTCATGGAAATATCGATATTTCATCTGCGCTATTACGGGAACTCATGTGGCGTAA # Right flank : AGAGAAGATGCCCCGTCTCATCACCCATGAGACGGGGCATCTTTGCAGTAAAGGTAGATACTAATCGATAGCGTCGAAATCGACTACATCAAACCCGAGAATTCCTTCGGATGCGCTCACCACCGGCTTATCGCGCACCACATGCCGGTTTGCAATCCAATTGCGGAACGACTCTTCATCCTGCCAATGAGTCATCGCAAAATATTCGGTACCGCCACTGGTGGGGCGCAGCAGTTCAAAGCTCAGGAACCCAGGAACTTCATTGAGCTTTTCGTTATTGTTCTTGAACCGGCGCTCCAGCTCCTCGCCCATGCCTTCCTGCACGCTGAGCTTATTAATCTTGACAACTGCCACGCTAATCCTCCGTTGGTTTTATGGCTTATAGTTAGGGATGCCTGATGAATGCTTTAGTTTTAGCATAGGGCACACCGCGTCTCGATAATAGATGCGCACTATTTATGACGTTATTTTGCCTGTCTCGCAGTATCGCAAGTGCTGCC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //