Array 1 2249722-2248754 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024510.1 Longicatena caecimuris strain 3BBH23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 2249721 33 100.0 33 ................................. ACCTGTACGCTCATCTGTTAACTCAATTTTGTG 2249655 33 100.0 35 ................................. CATCATTGGCAAGTATTAAGCACTTCCCAATTTGC 2249587 33 100.0 35 ................................. ATTTCAAACTTGGTTAGGTCAAATCAAATTTAAAG 2249519 33 100.0 34 ................................. AAATGACGCTGTATTTATCGATTATTATACGCGT 2249452 33 100.0 34 ................................. TCATACCATTCGGGTAATGTCTTTGGTTTTGATA 2249385 33 100.0 34 ................................. CCGACGTGAAGACAATTTTTCATCGCATGAATCG 2249318 33 100.0 34 ................................. TTTTATAGTGGTTGATTGTTGGTTAGTTGTTGGT 2249251 33 100.0 34 ................................. ACCCTTTAAACCGGTCATTTTACTGTCAACATCA 2249184 33 100.0 34 ................................. CATCTGTCTAAATACATATAAGTCAGTTGCTATC 2249117 33 100.0 36 ................................. TTTTTGTTTAATGATTTAAAGATAACTTCGATAATA 2249048 33 100.0 34 ................................. ATGAATATATGGTAGGTGATAAATATGAACAACT 2248981 33 100.0 32 ................................. GGTAATTTTGGAGATATTGAAATCTACGACCA 2248916 33 97.0 97 ............................C.... AATTTTAATTGTTCATACGTGTTGATCTGCAGCTGTCGTACCTCTTGTACGAGAGTTGAAATAAATTGTATATGTATACTGCGATCTCCCCGGTTCC 2248786 33 93.9 0 ............A.......T............ | ========== ====== ====== ====== ================================= ================================================================================================= ================== 14 33 99.4 39 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGGAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAAAATTCAGTGTTTGAATGCAATGTAAATCAAAAAGAATATGTTGAATTGCAGCATGTATTGTCTACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATTGGAGCAAAACCAACATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTGAAGCTAACATAAATTTCCTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGATTTTTATGCTTTTATTTGATAGAAATTTAATTTTTATGTTAATTTAATGCAAATATTGTTACTAATATCGAGATTAAAAGCAATATTTGCT # Right flank : TATTGATTTTAGATGAAAAATTATTGAGGATAATCGGTCGTACTTCTTACGAGAAATTCAGATGTCTATATGTAAGTATTTACAAATAAAAAAGGCAAATCCTCTTTGGATTTACCTTCCAAATAACGTATTAATCTGCCTTTTCTGTAACATCCTTCATCTTCTGCAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAAGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATCAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTTATGATAGGAACATAAAGTCCGAAAATCAATAATAAGGTAGAACCACTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2262497-2261805 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024510.1 Longicatena caecimuris strain 3BBH23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 2262496 33 100.0 32 ................................. GCAAGCAATAGATTGGAGTGATGAAGATGAAT 2262431 33 100.0 33 ................................. GCTCATAACCCTGTCGACGAGTCCTGAATGCCA 2262365 33 97.0 37 ......................C.......... ATCGCTAGAGTTTGTTCCACCTTTTATCTTTAGTCCT 2262295 33 100.0 36 ................................. AACCTTTACTTTTGCTTTAGCAGGAGTTTTTAGCTC 2262226 33 97.0 34 .......T......................... GATTTAACGAACATCATAAACCAAATGAACAAGT 2262159 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 2262093 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 2262025 33 100.0 157 ................................. GAAGTAAATAAAGCAGATGAAGTTATCAGCGAAGGTCGCATCTTGTAAGAAGCGTGAGTTGAAATGATAAAGTATTCGATAGAGCACTCTATGAGAAACGCCGCATTCGCGAGATGTGTGAGTTGAAATTGAATCGTACATAATTATTTGTCAAAGT 2261835 31 90.9 0 ....C.--......................... | ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 9 33 98.3 50 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : ACTAGTTTATTTAATAGATATAATGTTGCAAAATCAAAGAAGAAGGATTTTATAGAAGATACTGTTAGAGGAATTTTGATGTTTTTATTTTTGTTTTTACTATCAAAATTAAATGTTTCTTTATAAAAATCTAAGATAAGGAGTACTGTTATTAAACATTAAATAAAAATGAGGTGAATAAAAACAGTGGCTACATTTTGGCTACAAAAACATTACGAACGAATCGGATTGTGCGGATAATCAATCACAAAACACATATAAAACGAACTAATAATACACTTTATAAGCGTTTGTACGAATGTAAAAGACGAGTGGGAATAAATTTAACTATTTAATAAGTTGGTGCGAATGGGAAGCATACATAAAAAAGCTAAGAGATTCGCACCAATTTTTTTGTATCATATGTTGTAATTTATAGAAAATAATTGAAGAAGTATTAAGAAAGTATATAAAATTTATACATTTCTTCTTTAAATGGTATGTTTTACATGAAGATTTGC # Right flank : GTTGCATTTGGATTCATGTAAGTTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATGAATCCAAACACACCAAATAATTTACCACCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGTTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAGTTTATGTTGTCCTTGAACATAAGAAAACAGAATCCATGGTATCATAATACCGCCGGTACCTAATATTGGAAGTACATCAAAAATCGTTATGCCTAAGGCTATTAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGACTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATGTTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTTT # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-1.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //