Array 1 42447-45586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBI010000005.1 Streptococcus uberis strain GCPRG115 Contig_5_193.712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42447 36 100.0 30 .................................... GAGCTTGGTTTTAATTCAGTAACGCTTGTG 42513 36 100.0 30 .................................... TAAAGCCTGTTCCTTGATAAAAACGACAAT 42579 36 100.0 30 .................................... TTTGTTCATAAGATTTGCTGTACCCTTTCG 42645 36 100.0 30 .................................... ATCAATTCTATCAGTTTCCACAGTGGTTGC 42711 36 100.0 30 .................................... TTGGCAATAAAAAGCTTATCAAGGCTAGGT 42777 36 100.0 30 .................................... TGTAGCGGAATCAGCGTCATTACTTGATAG 42843 36 100.0 30 .................................... AAGAGCGTCGTGGTTATAGGATGCCTACAG 42909 36 100.0 30 .................................... AAAATGTCCTTGTTGTTGATAACAAATTGT 42975 36 100.0 30 .................................... ATAAGTACGATAAAGATTTAGAATTTAGTC 43041 36 100.0 31 .................................... TCTCCAAAATAATTAGAGAATATCCAAGTTA 43108 36 100.0 30 .................................... CTAATGCTAATTTTGAATTAGCTAATGGTT 43174 36 100.0 30 .................................... AACTAGTATCAGAAGATAACCCTAAAGGCA 43240 36 100.0 30 .................................... AACTAGTATCAGAAGATAACCCTAAAGGCA 43306 36 100.0 30 .................................... GTGAATTACCTTCAAATTTCGAAGCGGTAG 43372 36 100.0 30 .................................... TTCATTAAAGTTTTTAGCAATGATAGAGTT 43438 36 100.0 30 .................................... AGAGAGACCAGCAACTAAAAAGAGAACGTG 43504 36 100.0 30 .................................... GTGCTTTGACAAAAGAAAATATCATGGCTG 43570 36 100.0 30 .................................... GTACTGATTACAACTGGTCACAGTTCGGTT 43636 36 100.0 30 .................................... TACTCTGATAAGACAACAAAAGCCGACTCA 43702 36 100.0 30 .................................... AGCTTGGGAAACAACACAAGAATTAACACT 43768 36 100.0 30 .................................... ATTTGACAAAGCAACAATCAGACGAAGTCA 43834 36 100.0 30 .................................... GGCAAGCTAAGTAGTGAGGTTAGATAACTT 43900 36 100.0 30 .................................... ACATGAAGCAATTAAGAGAACAAGAAATGA 43966 36 100.0 30 .................................... AATCAACCCCCAATTATTCTGTAATCCATT 44032 36 100.0 30 .................................... ATTGCAACTGCATTTTCATCGTAAGCCGTT 44098 36 100.0 30 .................................... ATAATGTTTCGATGTCAATTGCAGTTAGAA 44164 36 100.0 30 .................................... AGATTCCTTTTGGTATCTCTCGTGATTGGT 44230 36 100.0 30 .................................... ATGCTTTGGAAGAGAATGAACCAATAGACT 44296 36 100.0 30 .................................... TAGTGCCTTACAATTACACGTATCTGCCAG 44362 36 100.0 31 .................................... CTAGGTCTATCGCCGTCCGTTATCAGTAACA 44429 36 100.0 30 .................................... TGGAGACTACAATTGATTTTGACGAATATA 44495 36 100.0 30 .................................... CTGACGGTGTTGCCCACTCTGTTACTTACA 44561 36 100.0 30 .................................... ATATGCACTTCGCAAGTGTGTCTGACTATA 44627 36 100.0 30 .................................... GTATTCAAGCACAATCTGCTGAACGTGTCG 44693 36 100.0 30 .................................... TTTTTAGATTCATCTGATAGTGCTTTATTA 44759 36 100.0 30 .................................... ATGAATTTTATGATCATAACAAAGAATTTG 44825 36 100.0 30 .................................... TTCTGATTACGATTTCACAGACACACAAAC 44891 36 100.0 30 .................................... CGTCGTTTATAGACTTCGCTCTTAGCAAAC 44957 36 100.0 30 .................................... TGAACGCTTCTGCTTCTGCGATAGCTTTAT 45023 36 100.0 30 .................................... TTATGGAAACTGCAAGGGATAACTGGGATG 45089 36 100.0 30 .................................... ATTTACCACGCTTGCAAGTTATTGAAGCAA 45155 36 100.0 30 .................................... CTTAACATCTAAGATGGTATAGCCACTCTG 45221 36 100.0 30 .................................... AAATACGTTGATAAAGTTGGCGGTCGGTCT 45287 36 100.0 30 .................................... TAGTTACTGCAATGCCTGAAGGCGTAACTC 45353 36 100.0 30 .................................... CTCACTCAAAATGGGAAGCAGAACAACAAA 45419 36 100.0 30 .................................... ATCATGTTGATATTTACTCAGATGGCACTA 45485 36 100.0 30 .................................... AGATAACTGGTAAGTCATCAGAGAGCACTG 45551 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTAGATGACTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATCTGTGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTACCCAACTAATGATTATCCAAACGAAGATCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACACGCTTTATCATTTTAATGATGAAGTAACTTTTGAAATTCCACATGTGAATTCTATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTGATTTGAG # Right flank : TAGTGTTCTTAAGTAGATTTGGCAACTGTTTATTTTTAAATAATTCCATATTACCTCAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATATAATGGTCTTAAAAATGTATATCGAGAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //