Array 1 174988-175809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGGC010000004.1 Escherichia coli strain GU815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174988 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 175049 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 175110 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 175171 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 175232 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 175293 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 175354 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 175415 29 100.0 32 ............................. TTCATGCGCCGCCCCACTTCACTGATAGCGAA 175476 29 100.0 32 ............................. CTCAAAATCGGCGGCGGTTAAGTGGCTGACAT 175537 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 175598 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 175659 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 175720 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 175781 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191311-192742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGGC010000004.1 Escherichia coli strain GU815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191311 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 191372 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 191433 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 191494 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 191555 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 191616 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 191678 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 191739 29 100.0 32 ............................. GCGTGGGCGAAATTGCGCAAAATACCGCTGGG 191800 29 100.0 32 ............................. GGCGATACGCCGCGCGATCGCATCCTCAATAT 191861 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 191922 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 191983 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 192044 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 192105 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 192166 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 192227 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 192288 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 192349 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 192410 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 192470 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 192531 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 192592 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 192653 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 192714 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //