Array 1 752815-752664 **** Predicted by CRISPRDetect 2.4 *** >NC_017059.1 Pararhodospirillum photometricum DSM 122 chromosome DSM 122, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 752814 29 100.0 32 ............................. AGGGCGGCAACAGCAGCGGAAAGGGTAGTAAC 752753 29 100.0 32 ............................. TTGCCGGGGCGGGAGCCACTCGACGCGGTGAT 752692 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTATCCCCTGCATGCGCAGGGATGAACCC # Left flank : CAACAACACTGATCGCGTTCATTTGAAAGCCGTTGGCGCTCAAAATCTTGACTGCATTCTCCGCCGCCAGATGATCGGAAAAGACAGCAATCGTCACGTCCGGTGAAGTCATTGTAGTGTCCTTCCGGGTTTGGAGAGAAGCGCACTCTCCCCGGCTGGGGCCGCTGTCTCTCTCTGGTCAGCGTATCCGCTTGGGCTTGACGACCGGGAGGATCGGAAAATACTTATTTTTGGGAGAAAAATGACATCAGTCGATCTCTGAAATGACCGCCTTGATCAGAGAGATCCCCTTCAGCAGGGAAGGCCAAGCAGCCCGCCGCCCCCCAAGGGCTCGTGGGCGATAAAACCTCAAAAACGCAGGAGACTGACGTGCCGATCCTTGCCCCCCTCCCTAAAAACCTTTGTAAAACGCCACAACATTGATCTGGTGACAACAAAGCCCAAGACCCCTGAAAGTCCTTGACTCAATCCCCCATTCCGGTCAATCCCTTACAAAGAGG # Right flank : TCGATCTCCATCCCCTGGGGGATAATCGCGGCGTATCCCCTGCCGCTGACGAGGTCTGTGTGCGCCTCACGCCCCCGACCTAGGCAACCCCTACCCCAACCCCGCCGCCGCACCAGGGCGCCGTTTTTTGGGGAGTGCTTGATCCCGGGCGGTCGCCGTCCGATAATACCTCTTGAAAGTTGGGGGTGCGGGTGTGGGGAGGTGATCGGTTTGGCAAAGGTGGGGAGGTGGGATTAGGCGGGAAATGGTGAGATAAAACGGGACGTTAGACTGAAATGGCCCCGAAGGGCGGTTTGGCACAGATTGATCGGCTCTGATCGTAATTAGCAGGTGATTTGGCACACGAAGCGAGAGGGAATGGCCGAGGGTGGCATGGGTTTTGGCGCAGCCACCCTCGTACCGGCAACGACCTACCTAGTGGCCGCAAGCAGCAATAATGCCAGCGTTTATGGAATTTTGGACGTCGGAGATTTTATTCTCGTAAAACGATACAATAACAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCCTGCATGCGCAGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 1575922-1575546 **** Predicted by CRISPRDetect 2.4 *** >NC_017059.1 Pararhodospirillum photometricum DSM 122 chromosome DSM 122, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================== ================== 1575921 29 100.0 32 ............................. TCGCCCTCGGCCTCGAAGATCACTCCCGCCGC 1575860 29 100.0 32 ............................. TCCCCCTCATGGCCGAGGAGGTGCGACCCCTC 1575799 29 100.0 197 ............................. AAGGTCACTTTACCCCAAGGAGTGCTTTTGCGCGTGGGCGGGGTTTTTGGTAGTGGTCGGAGGTGGCAACACCCTCTATAATCTGACTGCTAGCCCCGCTGCTGACTCGACCCTGGGTTCCCAAGGCGGTGGAGTGGTTGACGGTAGAGGGTTCCTGCCGTCAACTTGGCCGATGGTGTAGAGAAATCCCACGTCGC 1575573 28 72.4 0 ..G........T...AG...C.A-.G... | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================== ================== 4 29 93.1 87 GTATCCCCTGCATGCGCAGGGATGAACCC # Left flank : TTCCCCTGGCCTTTCGGGCCGTGCGCGAGATCAACGAGGGTCGCCATCCCAACCAGCGTTTGGAGCGTGTGGTTCGTTTGATGATGGCCCGCGCCCTGACCCGCTCCTCCCTGATTGATACCGTGATCGACGACATCAAGGAGATTCTGGCCTGATGATCCTCATTTGCGCGTCCAACACGGTGGATCGGGTCCATGGCTTCCTGCGCTCATGCATGCTCAATCCCCATCCCGGGGTCTATGTCAGCGTGACCCTGGACGCGGGAAGCCGAGAGCGCGTTTGGACCATCCTCGAGGGCTGGTGGAACGCCGAACCCCAGGGAACCCTCCTTATGATGTATAAAGCCAAGGAAAAACCCATGGGACTCGACTTCCGATCCTTGGGAGTCCCCAAAAGAACCGTCGTCGAACGCGACGGCATTTATATGTTGATAACAAAGACCAAGAACACGGAAAGTCCTTGACTCATTCCCCCATTCCTGCCAATCCCTTACAGGGAGG # Right flank : CTGAGTCTGGGAGGGTGGTGCGCGGCGTTTTTGGAGCAAGGGGCTCTGCGCTTGCTTCCTCTCTCTGAGGAGAGGCGCCATACTCCTCTCATGCCGCCCTATGCCGAAGCCGCTGCCGGCTGCCCTAGGGGGGCGGCTGGGTCCGGGCGGAGGCAGCTTCGCCGGACCACCCTTTTCTCGCCCGTTCTGGAGACGAGAAACACGGATTTTCCGTCTCTAAAGGAATCGAGGGGTCTGGGGAGGCCGCGCCTCCCCAGCCTTCCTTTCCTCGTGGCCTTTTTTCCGGGGCCCTCACGTCTTCTCGAAAACCCACGACAACCCTTCATCGCAGGCATAGCGGACCTGAACAGGGCGGCCGTTGTAAAGGCCGGAGCCGACCCATCCGTTGTCTGGATCGGGGGTGAGGCACAGAACCGGGGTGAAGGAGAGGCGGCGGCGTTGGGCGAGGGGCAGGAGGGCGGCGAGGGCATCGAGAAAGGCTTGGTCGGTGGCTGGGGGGA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCCTGCATGCGCAGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 1577453-1577846 **** Predicted by CRISPRDetect 2.4 *** >NC_017059.1 Pararhodospirillum photometricum DSM 122 chromosome DSM 122, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1577453 28 100.0 33 ............................ CTGGTCCGCAACCCGCACATCGACGCGCAGCGA 1577514 28 100.0 33 ............................ CAGGACTCTGATCTGTGGCCGCAGATGCGCTAC 1577575 28 100.0 33 ............................ CAAGGACTATATCGTGCCATTTCCCGCGCTGCT 1577636 28 100.0 33 ............................ CTATGGGACCTCGCGGCCACAGTCGGGAATGAC 1577697 28 100.0 33 ............................ CTCGTGGGAGAAGCTTGGTGTCCAGGGGGACTT 1577758 28 100.0 33 ............................ TGACGCTCTCAAGGCCGACCAGAAAGACGTCAT 1577819 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTATCCCCTGCATGCGCAGGGATGAACC # Left flank : CACTCACCGCCTGATAGGGAAGCTCTGCTTCTTCCCCACTCTCGTCGTAGCGCAGGGTCAGGCTCCCGTTATCAATAGAGAGACGGCAGTATTCAAGATAAACAAGCCCATGACGGCTTTTATGAGGAATGCGCGCCTTTTCAAGCCCTAGCCTGCCCTTCAGCATGGTCTGCCCCGGATATTCCCTTAAAGATTTTTACATCATTCAAAATGACCAACAACGAGCACAAACGCAATCCATCAACCGATCTTGTCCCCAAATTTTTTCCACCCCCCGCGACCTTGCCGCCCCCGCCCAGGCAGCCCCTTAAGGACCACCCCTCTCAAGGCTTCATGAAGAATCCCATCTTAAAAAAGCCCATGGAACTCCCCCCCAATCCTTCCCCCCTCCCCGACTCTCCGTGTAAAACGCCCCACCATTGCCCCATTAACAACAAACCCCAAGAACCCTGAAAGTCCTTGACTCATTCCCCCATTCCTGCCAATCCCTTACAGGGAGG # Right flank : CACCTCTTGGCTGAGTCACCGCCTCGCTGACAGACGGATCGGTGCTGGTTTTTCCGGGGGTATCCAGCTACAATACGCCCGTGGATCACCCTATGCCGAGACCGCCGCCGGTCCTCCTAGGGGGGCGATCTGGCCCGGGAGCGGCGGCGTCTCCCGGGCCGCCCTGTCCTCAACCCGACCTACGCCACAGCAGCGTCCCGTGGCGCACTATGCCCGCATGGTTACGAGTGGTGAGAGCAKGGGAATTGGTGTACGGGGCTGACCGAGGGACAGACTGGGGACGACCTCCCGCCTCCCCAGACACTCCGCTAGACCTGAAAAACCAAACAGACCGAGGGGTCTGGGGAGGCCGCGCCTCCCCGGCCTTCTTTTGCACTGACCTTTCTCTCTACACTGATCTCGGTGAACATGATTGCCCACCCTCCCCTGGGGCGGTACACTTCTCCCCTGCAATCGCCCTATGCCGGAGCCGCTGCCGGCCGTCCTAGGGGGGCGATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCCTGCATGCGCAGGGATGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 4 2386892-2386070 **** Predicted by CRISPRDetect 2.4 *** >NC_017059.1 Pararhodospirillum photometricum DSM 122 chromosome DSM 122, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2386891 29 100.0 32 ............................. CCTTCTGGGATGTCGAGCTAACCCCCCGGCAA 2386830 29 100.0 32 ............................. CTCTGCCCTTGTCCTGGGACGCGGTTTCGGCC 2386769 29 100.0 32 ............................. GCGGTTGGCCTCGACCGCGTCCTTGTTGGGGG 2386708 29 100.0 31 ............................. GCCGGGCGCTCGAAAAAGTCCTCGCGGTACA 2386648 29 100.0 32 ............................. CCCCCCTCGTGCCCCAAAATGCTCTCCAAGAG 2386587 29 100.0 32 ............................. GAGGATATCTATAACGATCCTACGATTACCCA 2386526 29 100.0 32 ............................. GCATCAGCGTATTTTTCGACCCGATCTTGTCG 2386465 29 100.0 32 ............................. GTAGGCGTCGGCAAGCGCCTGGAGGTCGGACG 2386404 29 100.0 32 ............................. CGCATCCGGCGTCACTAGCAGGGATTTTTGCC 2386343 29 100.0 33 ............................. AATATCACTCTCGCCCGCTCGCTTTTTGGGCCA 2386281 29 100.0 32 ............................. GCGATGGACGGGCACTTTACTCGGCCGGAAGA 2386220 29 100.0 32 ............................. GCGCGGGAACCGAGTTTTAAGCGGCTCCAGAT 2386159 29 100.0 32 ............................. TCTTGCAACATATACTGGGCACCGCCGCCCAG 2386098 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : ACCCGCCTCTTGGAAAAAATCATTCCAACCATTGAGGACGTGCTGGCCGCCGGAGGGTTGACGGTCCCCGACCCTGCCCCGGAGGCCCAGCCGGTGGCGATCCAGGAAAGGCCTTCAGGAGATGTTGGTCATCGTGGTTGAAAATGCGCCGCCTCGTTTGCGAGGACGGCTTGCCGTATGGCTGCTCGAAGTTCGCGCTGGGGTCTATGTCGGGGACTACGGCGCCCGAATACGCGACATGATCTGGCGGCAGGTCCAGGAAAACATCGGCGACGGCAACGGCGTGATCGTGTGGAGTGCCCCCACCGATGCCGGATACGACCTGGACACCTGCGGAGCCCATCGCCGAATTCCCGTCGATTTCGATGGTCTACGTCTGGTTTCCTTCCTCCCTCCCCCCACCCAGGGAACACCGGACAAGCAAGAACAATAAGGGTACAAAATTCGGTGCGCTGATTGACATCAGAAAGAGCCTATGATTACAATCCTTTCCAGGAAGA # Right flank : CCCCATAGGCGCCCCGGACCCCGCCTAGAGGCGATGCCTCTAGACCTCCCTTTTTCTTGTTGATTGATAAAAGAAAAAGAGGGTTTGGGGGGGCATCGCCCCAAAAAAAAATCGGGCGCCAGCCCGATATCCGCCAAGCGCATCGCCCAAAACCCCTTGATAGCGTCTCCACCAAGCAATACTCTCTCAGGGAGAACCCTTCCCCGGAGCCCCGTCATGCTGCCACCGGTCCTGGAACTCTATGCCCTCTGGCACCCCCGAGACGACCGGCAGGCGCGGCCGCTGGCCGAAGCCTTGGTGGACCACTACCATGGCGACCTGTTCTCCGGGCTGATCGGCGGCGCGATTGAGGTTTGCTTTCGCTCGGAAGGCTGGGGAAACGAGGCCGACAGCGCACCGCGTCCCCTGGTCCTGCCCGGCGACGCGGGACCGCTCCCCCCGGCGGCGTATGGGGCAGTGTTGTGCTTCCTGGGGCCGGGCCTGGCTCGGGCCGTCGCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3252815-3252482 **** Predicted by CRISPRDetect 2.4 *** >NC_017059.1 Pararhodospirillum photometricum DSM 122 chromosome DSM 122, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3252814 28 100.0 33 ............................ GCTGCGACGGCGGCGACGGCGTGGTCGCGTCTG 3252753 28 100.0 33 ............................ CTCTGCGGCCCTGGTCTCGGGGAACCAAGCAAT 3252692 28 100.0 33 ............................ CTCGGGGGTGCGCCCCCCAGGGTATGCCGCAGC 3252631 28 100.0 33 ............................ CCTAATAGGGGGTATTGGATATGGCTATCACAC 3252570 28 100.0 33 ............................ CCTGTCGGACATCGTCTTGGTCCCCTTCGCCCC 3252509 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTATCCCCTGCATGCGCAGGGATGAACC # Left flank : TGAAAACCTTGCCCGGCGCCACCATGAGCCCCGACCCCGGGCAGAAGGATACCCCAGGTCGCCATCGCCTGCGCGTGGCCCTGGTGCCCGAGACCGCCGTTCTGGCCCAGGCGCTGGCACGGCTTGACACCGTTCGACCGGGTTGAACGGRGTCAAGCCGTGCCAGCGCCTGGAGAGGGGAAGGGGAAGGGAAGGGGAAGAAGGAAAGGCTGGGGAGGCGCGGCCTCCCCAGACCCCTCGGTCTGTTAAGGGAGGGATGCCGCAAGCTGTTCCCCCACCAGCTCACTCCAGCGCCTTCAGACACTCAAAGGCCGCTTGCCGCTCAAGATATGGCGCAGGATATCCTATAAAATAAACGCGCAGCACTCCCTCCCGATCCTTTCCTTCCCCCTTTCCCCCCTTTGTAAAACACCTCACCATTGCCCCCTTGACAACACCCCCCAAGAACGCTGAAAGTCCTTGATGCAATCCCTCATTCGGGTCAATCCCTTACAATGAGG # Right flank : TGAAACGGGGATGGTCTGCGGTCCGGGTGTTGTGACGGAGACGCCCTCTGCCTCCTTTTTGTATGCGGCTCGGCCGGGCCTGAAGAACCAAACGGAACGAGGGGTCTGGGGAGGCGAGCCTCCCCGGCCTTTCTTTCTCTTTTTTTTCGGCTTCTTCAGGAGGTTTCCCTGGTCACAGACACCCACAGAGCGGGGCGCCCCATGATCCTTGATGAGTTTTTGCTGACGGATCAGTTCAGCGAGACGCATGCCGGTGCGATTGCGGCGACGCCGGGGGCGGTGGTGGGGGCGGTGGCCTCCTACCGGGTTGAGAGTGACCCGGTGATCCGCTGGGCGCTGGCTGTGCGTGAAGCGCCGGGGCCGCCCTGGTGACGGGGCACGATGCGGTGATCAGTTCGGTGCCTTTTACGACCAGCGCCCCCCACGGCTTGATTGCTACGGCATCGCAATGCTCCCGTATCGGTTTGCCGAAAGTGTCAGACATGTCTTCGTACACCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCCTGCATGCGCAGGGATGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //