Array 1 147725-148955 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP031274.1 Staphylococcus chromogenes strain 17A chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	====================================	================================	==================
    147725	    36	 100.0	    30	....................................	CGACAAGCACAAATGGTTGACCATATTATC  	
    147791	    36	 100.0	    30	....................................	CTATCATAACGCTCTTTCCACTGCCAGGCG  	
    147857	    36	 100.0	    30	....................................	TTTGAGTCAAATGGCGTAGCGTTTAGAAGT  	
    147923	    36	 100.0	    30	....................................	AAAGTCGTGTATCAATTGACGCAATCCAAC  	
    147989	    36	 100.0	    31	....................................	AGATTGTTAAACGACGAATTGGTTTAACTGA 	
    148056	    36	 100.0	    29	....................................	AGCTCTACACCCTCAACAACCGCTGTTGT   	
    148121	    36	 100.0	    30	....................................	AAGAGCGGTTGTTTTACTTTTCTTACTACC  	
    148187	    36	 100.0	    30	....................................	ATAATCATTCTTCCTAGTACGTCTGATTGA  	
    148253	    36	 100.0	    30	....................................	ATATGACTCAAAGGTACACCCTCAATCATC  	
    148319	    36	 100.0	    30	....................................	TTATGGATTACGTGGCTTTTGTTGAGGGGT  	
    148385	    36	 100.0	    30	....................................	TAAGGAGGGGATATTGAATGAAAAGAACAA  	
    148451	    36	 100.0	    30	....................................	CTGCATCAGGTGAAGATTTAGGACAAGTAA  	
    148517	    36	 100.0	    32	....................................	TCGGTGGTTACATTATGATTGGTTTGCCGAAA	
    148585	    36	 100.0	    30	....................................	CACCATCGCCATCACCCAATGAACTCATTA  	
    148651	    36	 100.0	    30	....................................	TACCGTCTTTTAATTCCTCTATACGGTTAC  	
    148717	    36	  97.2	    30	.............................T......	ACATTGGTATTGCGGGTGGCGGTCAGGTGT  	
    148783	    36	 100.0	    30	....................................	ATAAGGTTGACGCAGCACCCTTACAATACG  	
    148849	    36	 100.0	    30	....................................	TTAACGTTTTAAAAGCGACACTTGAACGCT  	
    148915	    35	  91.7	     0	.................-.........T.......A	|                               	TTT,CA,C [148941,148948,148952]
==========	======	======	======	====================================	================================	==================
        19	    36	  99.4	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                                	       

# Left flank :   TGATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTAGTTGTGAGAAGGGAGGTAACTGATGTCCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG
# Right flank :  ATGTACTATATAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATAATGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGATGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAATAATGAAGGTCGACGTAGTAAAAGAGGGGCACGCCGTCTGAAAAGAAGACGTATACATCGTTTAGGGAGAGTCAAACAGCTTTTAGCCAAATACGAATTGTTAGATTCATCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAATAGGATTAAGAAATGAACT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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