Array 1 889531-884205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOO010000001.1 Bifidobacterium adolescentis strain 1001713B170214_170313_A6 NODE_1_length_960417_cov_69.8637, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 889530 33 100.0 33 ................................. TTCCACGCGAGGTTGAGTTTCCGGCGCGAGTTT 889464 33 100.0 34 ................................. GACCGCAAGGGCGACTGGTCTCAGCGCGTGGCAG 889397 33 100.0 34 ................................. GAAGATAGTGTCAGGAGCGATCACCGCCGACAAG 889330 33 100.0 34 ................................. TCTCGCAGCACCAGCATCTTGACCTTGCGTATTT 889263 33 100.0 33 ................................. TCGTTGAGCGCTTGGATGAACTGGAAAGCCAGC 889197 33 100.0 35 ................................. AATAACCAAATGGCGCAGTTGAACACGATTGGCAG 889129 33 100.0 34 ................................. GTCCGACAAAGGCAACAGCATGTCACACACACTC 889062 33 100.0 34 ................................. CATTGTCATGGAAGACGGCGTGCATAACGGACGC 888995 33 100.0 33 ................................. TGGCAATTCCTCGCCGACATGATTGCGGAACAG 888929 33 100.0 36 ................................. TACAATGCCGTGAACAGTCTCTAAAAAGCATTAAGC 888860 33 100.0 33 ................................. TCTACAAAACGTGGGCAAAATGTGGGCACGGAA 888794 33 100.0 35 ................................. ATCCAGCGCGTTATCGAAGTACAGCAGCCGCGAAG 888726 33 100.0 33 ................................. TCAAGCCAACACACCGGCTCTCATGTCAGTATC 888660 33 100.0 34 ................................. AAGTCGTTGTCCATATGGACACGCCAATATCCGC 888593 33 100.0 34 ................................. ATCTGAGTGGCCGAGGGCATGCGCCTCTGATATT 888526 33 100.0 33 ................................. ACGTATTGGTGTATTTCGCCGGTTGAGCCGATA 888460 33 100.0 34 ................................. AAAGGGAAAGGTCATCAAATAACCACCGCCACTA 888393 33 100.0 35 ................................. TCTGTCACTATTTGTCAGATTTTTTGCAGTTTGTC 888325 33 100.0 34 ................................. TTCCTTGCCCTGTACGCTTTCGCGCGGCATGCTC 888258 33 100.0 33 ................................. GCTCAGCGAGCTTTTTGATACTATCATGCAACG 888192 33 100.0 34 ................................. GCAATTACGACGGATGATAATAAACTTAATTATC 888125 33 100.0 35 ................................. TTTTGCTGACATGATTAATATTACTACTACAGTGG 888057 33 100.0 34 ................................. GACTTGACGTCGCCGCCGATGGCGATTGGCGCGA 887990 33 100.0 33 ................................. ATGTGAAGCACCGCTCATTTTTCATATAAGAAA 887924 33 100.0 34 ................................. GTCCATATTGTAACACCGTTGCTGAAAATATTCC 887857 33 100.0 34 ................................. CGAGACATATGGCACAGTCCTTAAGATGGCGAGA 887790 33 100.0 34 ................................. GATAGGTGGCTTGTGCGCGTCCCTCAAGTATGCG 887723 33 100.0 33 ................................. TTGCAGATAAAATCATCACGACGAAAACCCAGA 887657 33 100.0 34 ................................. GATGCGCGGCTGAAAACGGGGAAAACGGCGACAC 887590 33 100.0 34 ................................. TTTTCCGTCGAAGTCGTGCCGCCCCCTTCGCCTA 887523 33 100.0 34 ................................. ATGGACCCGCAAACCGGGTCGATGAACGTGTCAA 887456 33 100.0 33 ................................. CAGCAATTGGCGTCTAAGACGCATTCGAAGATT 887390 33 97.0 34 ...................A............. ACGAAGAATATCGTTGATCTTTGCCCCTTGAGCG 887323 33 100.0 34 ................................. TCTATGCGCAATGGGTATATCGAAGAAGGGCTTG 887256 33 100.0 36 ................................. AGCACTAGGATGAACGCCTTTCTTTGCTTCGCTGAG 887187 33 100.0 33 ................................. TTTTTGCGCCGTCCTGTCAAGTCTTTTTATTTT 887121 33 100.0 33 ................................. TATATCCCCAACTACAATGAGGCAGGGGCGACA 887055 33 100.0 34 ................................. ATCAAGCCTGAGCCACGCCATAAGCATCAAGCGA 886988 33 100.0 34 ................................. ATGGATGAAGAGGAAGAATCCCAGCACATGCGAA 886921 33 100.0 33 ................................. CTCTTGACTTTTGGCGTTCCAATAGAACGCGGG 886855 33 100.0 35 ................................. TCGTACGCGGTTATGGCGCTTTCCCGCGCCTGTAT G [886841] 886786 33 97.0 33 .............T................... ATGCAGTTGGTGTCCGACATGGTCGGCGGCCTG 886720 33 100.0 35 ................................. GGTTCCGTCGCCGCCCGCGGCAAGCTCCAGGGCGA 886652 33 100.0 34 ................................. ACCGTCACCGACGAAAGCGCCGACCACAAGACCA 886585 33 100.0 33 ................................. CAGAACGGAGCCATTCCCTGCCAGTCGGCATGC 886519 33 100.0 33 ................................. ACGAACTGTACGATGGCAAAATACGGACTGCCG 886453 33 100.0 35 ................................. CTTTGATGGTGGCTGGCGTGGTGGTTCCAGAGGCG 886385 33 100.0 34 ................................. CATGTTGCGGGCGTGGCCTTCTGGATGTTCAGGC 886318 33 100.0 33 ................................. ATCGAACCCCCGACCGTGGAATGGCCGTCATGA 886252 33 100.0 33 ................................. ATCGACACGGCCAAGTCCAGCGTCGGCGTGAAT 886186 33 100.0 35 ................................. GCCGAGCATGGCGACATGATTCGCCCGCAATACGC 886118 33 100.0 37 ................................. TGCTTATTGCGTCATGTGCGGCTGCATTTCCCGAAAC 886048 33 100.0 33 ................................. AGCGCCGACCTGACCAAGGCGCAGCTGAACCCG 885982 33 100.0 33 ................................. GTGCTTCCCGGCCACACTCCCCCGGAACCCGAA 885916 33 100.0 34 ................................. CGCTTCGGACTGTTCCATCGTCAATGGACGCCAG 885849 33 100.0 34 ................................. ATCGTGAGTTTCCCGCGACTCCACGCTCTCAATG 885782 33 100.0 34 ................................. GGTTTGACCGGCTACGCGATTCGCGTCACGGGCA 885715 33 100.0 35 ................................. CTGCCGCAGCGTGACGAGCTGGTCACGCAGGATAT 885647 33 100.0 34 ................................. TAAGGACGAATCATGAGTATCACCATAGAGAATC 885580 33 100.0 33 ................................. CACAAGTCTCGCCTATAACTTAGGACACTAGAG 885514 33 100.0 34 ................................. ATCTGAGTTGCGCTTGGCATGCGCCTCTGATATT 885447 33 100.0 35 ................................. AATAATAGTTTCGCCATTTGCCGACGCTCTCCGGT 885379 33 97.0 34 ...................T............. GTCGGCATGGCGAACTTCGCCGGCCAATTGCAGA 885312 33 100.0 34 ................................. ATTTTGTGGCCTCCAGATATGGGTTTTCGCTTGT 885245 33 100.0 32 ................................. CTTTTCGAGGGCGTCAAGTCGTGCGGAAACGT 885180 33 100.0 33 ................................. CGCGTTCCATCGAAATTTTTTCGCAAAAGGTTT 885114 33 100.0 33 ................................. AGTTTCGCCCGATACGTTTCGTCAAAAATCGGA 885048 33 100.0 34 ................................. ATCGACACCCACCGGGCCGAGATCAACGACATGA 884981 33 100.0 34 ................................. TTCGACAAGCAGCCGGAGAAGGAAGTCATCGAGA 884914 33 100.0 34 ................................. ATCGAGGTTTGAGCAACAGACGAACTCTGCTGTT 884847 33 100.0 38 ................................. AGCCAGCTCGTCAACCCGCAGAATCCGATACCGGCCAA 884776 33 100.0 36 ................................. TTGATGGTGATCTCACCGAGCTTGCCGGTGGTGCCG 884707 33 100.0 33 ................................. TCACAGCTCAAGGCGCATACCCGGTCGGCTCGA 884641 33 100.0 33 ................................. ATCGTAATTATCGGAATTGCGCGGGGTTTCCAT 884575 33 100.0 34 ................................. TAGGTGTAACAGTGTATGCAGTGGTTTTTGGAGT 884508 33 100.0 35 ................................. GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 884440 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 884372 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 884304 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 884237 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ====================================== ================== 80 33 99.8 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TGATGAGGACAGTCTGCGCTTTTATAAACTTGGCTCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACG # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //