Array 1 3837-2710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHO01000053.1 Streptomyces sp. NRRL S-350 contig53.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3836 29 93.1 32 ...........A..C.............. CACCCCCACACGAAGGAGAGCGCCTGATGGCC 3775 29 100.0 32 ............................. TGGCGGGTGGACCCGCTGGCCCTGCTGCTCTC 3714 29 100.0 32 ............................. GCCAGGTCGCCCTGGTAGTTCCACAGGGTTTC 3653 29 100.0 32 ............................. AGGTGGTGCAGCCCGAGGTGGCTCTGGCGAGC 3592 29 100.0 32 ............................. CTCGACACCGAGCGCAGCGTGCGGATCAAGGT 3531 29 100.0 32 ............................. CCGGCCGTCGTCGTCGCCGTGTGCTGCTGCGG 3470 29 100.0 32 ............................. ATGCTGCCCGACACCGCGCCCGTCACCCCGGA 3409 29 100.0 32 ............................. CCATCCTCGGGCTGTTCAGCGGGGAAGGGGAA 3348 29 100.0 32 ............................. GCGTCCGCCCCCGGGAACGGCGGCACGTTGGT 3287 29 100.0 32 ............................. GTGCTGGCGACGTCGACCATCACCGTGGGGGC 3226 29 100.0 32 ............................. GCCCTCGGCATGTCTGAGTGGTGGGTGAAGGA 3165 29 93.1 32 ...T.......A................. ACCTCCACCTGAGTCACGGGTGCCCACCCACT 3104 29 96.6 32 ...........A................. CGCATGGAGGCCAAGGTCGCGGTCCTGGCCAG 3043 29 96.6 32 ...........A................. CAGGCGAGCAGGAACATGATCAGGCCCACGAT 2982 29 86.2 32 ...........A..C.......G.....A CACTCTGACCCACGCTGACGAGGCAAGGCGCC 2921 29 86.2 32 ...........A.AC....A......... CAGATACTCGGCGCCTGGATCCGCTGGCTGGG 2860 29 93.1 32 ...........A..C.............. GTGCCAACCGTCGACGTGGATCCGGTGACCGG 2799 29 96.6 32 ...........A................. ATGCCGCTTCGGTGGCGTGGCGGTGGTCGTCC 2738 29 93.1 0 ...........A..C.............. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.6 32 CTCCTCCCCGCGCCTGCGGGGGTCAGCCG # Left flank : AGGATCTATCAGCTACCACTGACAATCCTCACGGCCCGCACATCGGATCCGGGAACGGGCGAGGGGCCGGGCCGACAGGCCCCCGCCGCATCGTCCGACGTCATCGGCACCCGACGAGCGCGTACGGGTAGTTCGCGTAACGAATTCAGACACTGCCAGTCAGGCCCAACCACCCCCTAGGTTGGAGCTTTTGGCCACCTTCTGGGCAGGCACGGCACCGGTTCGGACTTCTGCGATCAGGTCGGCCCCCACAGCGGCAGGACCACCACCGCCGACGGATCGCGCGCATCTACCTGCTCAGCCCTCGGCAAAGAGCACCCCCTTCTAGCCCCTCCACCGAGACTCAGCAGGAGCCCCCACCCGCCCCCGACCGCCGAACCCACCTTCACCGCCCATGGCATCATGTAGGCGCTCCTTGACACCTGGACACTGGGCATCAGCCGCACCTCCCACATGGTCAAGAAGTTGCAAACCGGCTAGAACGCCGCAGGTCACGAAGC # Right flank : CTCGTCCTCTACCCGGCGGGTACCGTCTGCCCCGGCTGACAGGTGGGGAAGGCGCCCGACCCGGCCGCCCGCCCTGGTCGTCCGCCCCAGGCCCCGGGGCCGGACCTGTGGGGTACGGGTCCACCTGCTCGGCCGCACTCGGGCGGAGTTGCGCCGGCACGCGCCAGCCTGGGCAGGCGACGAGGTCCGCCCCGGTCTCGCGGCCCGCGCCTACCTGCCCGGCTGCCGGGGGACAAGGGCGGTGCGGTCGAACGGGCCTCCGTGGGAGGCGGCGTACGCGACGGCGTCGTTGACGGCATCGAGGCCGAAGGCACGGACCCGTTCCGGGGCGAGGTCCAGGGCGCCCGAGGCGAGGAGTCGGATGATGCCGACGTTGGCGGTGCGCGGGTACATCCACTGGCCGCGCACGGTGATCGAGTTGCGCATGATCCACGGGTACGGGAGGGCGAGGTCGTCGCCACCGAGCATGCCGACGCCGCCCATGAGGACGACGCGGCCGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14298-14875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHO01000053.1 Streptomyces sp. NRRL S-350 contig53.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14298 29 100.0 32 ............................. CCCATGAGACCACCTCCTCTCAGGCGATGAAC 14359 29 100.0 32 ............................. GCCAGGGTCGCGGGGCCGTCGCTGGCAGTTGC 14420 29 100.0 32 ............................. GTGTCGGTGAAATTGTCCGTGACCAGCGACCC 14481 29 100.0 32 ............................. GTCGAGAACGTCCCACCCGGGAAGACGGTCAC 14542 29 100.0 32 ............................. GCGAGTACGAGGCCCTGGAACGCCAGCTCAAC 14603 29 100.0 32 ............................. CCCGCCCAGACGATCGCCAAGGAACGCGTCGT 14664 29 96.6 32 .G........................... ATGGTCGCCGAGGAGATGTCGCGCCTTCGGTC 14725 29 93.1 32 ............T....A........... CGTGTGGGGCGGCCCATCTGGTGGACGGTCCA 14786 29 100.0 32 ............................. GAACTGCGAAGGACCTTGCGAAGGACTTCGTG 14847 29 96.6 0 ......................G...... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : TGGTCCACACAGCGGCCAACGAGCAGGGCTTCGAACTGCGGACGGCAGGCGAGCAGCGACGGAAACCTGTGGACTTCGACGGGCTGACACTGGTCGCCATGGCGGGCTTGCAGACCGCTGAAGGTCAGGAAAAGGAAGAGACGCAGGAAGCCGCAGGCCAGACGTAGTTCGTCCCAGGCCAAAAGCGATCAGCCCCCATCCCGCAACGCTACAAGAGCGACTGGACCCGGAGTTCGGCTCGTGCTGGTGGGGGCAGCGGTTTTCGCTTCGATCACGTGGGCTCACCGCCACGAAAGGTGCTCTGCCCCCACCCGTCCATAAGGGCCGATCGGCGACCGGTGGATCGGCAGTGGCTCTCGCCAGGCCGACCGTGACACGATGCACGAGCGATCCTTGACACCCCGACAACTTGTGCGCCCGCCGGACGAAGCACCACTCAGCCCGGGCCGCCAACTGGTCAAGAAATAGCAAAGCCGATACTCCGCCGCAGGTCACGAAGT # Right flank : GTCGAGCGACGGCTTGGCGTTGGTGAGGTACTTGTCCTCCCCGTGACCGAGTCCATGGCGGTGAAGGCTTGCGAGGCATTTTCGTGCCGATGGCCCCCCAGGGTGGTGCATCGTCCGTTCGTCGTCGCCCGTATGGGTGTTGGGGCGTTGCCTGGGCTCAGTCCCGTAGCTCCGCGCACCCGACAGGCCTGTGGGCGCCGGTCCGAACCCGCGGCGGCCGCTTGGGTGGTGATCTGCGGGGCGCGGGCGGCTCCGATTCCGCCGGCGGCCCTCGCCCGTGGACCAGGGACGGCTGGATCACGTCGAGTAGCCCTTCGAGGCCACCCGCCCGCCACGGCGCGCCGATCGACCTGGACCACGTTCCCGCCGTCCGGCTCCGCATGGACCTCTGGCCGACCCGGAGGCTCAACTCCGTTGCAGCGTAGTGATTTTCGACCGTCCGTGTGCCGATACGCTGATCCGACGGCCACCTGCCGGGCTCGGGTCGCGATCGGGCACGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //