Array 1 126988-130288 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV792465.1 Serratia sp. HMSC15F11 Scaffold367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 126988 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 127048 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 127108 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 127168 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 127228 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 127288 28 100.0 32 ............................ TGCCGGCGTCACGGCGGGCTTCGACCTGTGCG 127348 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 127408 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 127468 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 127528 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 127588 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 127648 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 127708 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 127768 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 127828 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 127888 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 127948 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 128008 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 128068 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 128128 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 128188 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 128248 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 128308 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 128369 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 128429 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 128489 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 128549 28 100.0 32 ............................ ATCATGGGCATGCAACATGGCAGAGGATAAAC 128609 28 100.0 20 ............................ ANNNNNNNNNNNNNNNNNNN Deletion [128657] 128657 28 96.4 32 N........................... AGCGACCGGGAACCCGTTCGCGATCGAAACCC 128717 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 128777 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 128837 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 128897 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 128957 28 100.0 24 ............................ AGCGNNNNNNNNNNNNNNNNNNNN Deletion [129009] 129009 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 129069 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 129129 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 129189 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 129249 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 129308 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 129368 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 129428 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 129488 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 129548 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 129608 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 129668 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 129728 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 129788 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 129848 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 129908 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 129968 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 130028 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 130088 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 130148 28 100.0 22 ............................ ANNNNNNNNNNNNNNNNNNNNC Deletion [130198] 130198 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 130258 28 96.4 0 ....................A....... | A,A,G [130278,130281,130284] ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.7 31 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 138770-139876 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV792465.1 Serratia sp. HMSC15F11 Scaffold367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138770 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 138830 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 138890 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 138950 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 139010 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 139070 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 139130 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 139190 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 139250 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 139310 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 139370 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 139430 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 139490 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 139550 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 139610 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 139670 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 139730 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 139790 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 139850 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGGGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //