Array 1 125511-128523 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 125511 30 100.0 38 .............................. GTCAAGAACATTGCGGTATAAGCTAACCAACTTTTTAG 125579 30 100.0 35 .............................. GTCCTATAGATTGTTGCTCCGATACTTTTTAACTT 125644 30 100.0 37 .............................. CAAAGTATATAAACTCTTCTTATTTCTTTGCATGCTC 125711 30 100.0 37 .............................. GCGTCTTGTTCCGTCAGCATGTCAAAGTTTGTCCAAA 125778 30 100.0 38 .............................. CTGTTCAATTCCTCATTTGGAGAGTCAGTTAAACCAAG 125846 30 100.0 36 .............................. ATTTTCCTTTGGGCAATGTATTAAGCCGAGTAATTT 125912 30 100.0 36 .............................. TTCCATGCTGTATAGCTGTTTTGAACCTCGTCTATG 125978 30 100.0 36 .............................. TTGCAGAAACATTAATAGTCAAAGCCTGTGCCGATT 126044 30 100.0 36 .............................. AATCGTCCACACGAATTGCACTTCAAACAAACCTCA 126110 30 100.0 38 .............................. ATGCTACTTCATATGCCTTTTTAGCCTCAATTATTTCT 126178 30 100.0 36 .............................. TAACAAATATCATGCAAGCAAGGAGTAGGGGGATGT 126244 30 100.0 37 .............................. CACTCTCTATTATTAAGATACACCCCCGCTTCATCCA 126311 30 100.0 36 .............................. CTTTTTAGATTATATTCTTTGTAAAACTGTTTAGCT 126377 30 100.0 38 .............................. AGCACATTCTTTTCTGGTGGCTTATAACCAGCTCTATC 126445 30 100.0 38 .............................. TGACATATCTAATTTTCTGGGTTTTGGTTTTACGAATT 126513 30 100.0 38 .............................. TTCTCTTTCGGCAATTTACTTCACCTCCACTTTGGCAA 126581 30 100.0 36 .............................. ATGCTTCTTATCCTTCTAACTATTAGTTTGAGCTTT 126647 30 100.0 36 .............................. ACATTACTCATTATCAAGCACCTCAACAGCTTCTAT 126713 30 100.0 37 .............................. ACCAGACACAATTGATTCAAGCTTCAATTCTAACACC 126780 30 100.0 38 .............................. TGTAATGCAAGATATTTTGCGGGTTATTTTAGTTGTGG 126848 30 100.0 35 .............................. ATTAATATATCAAAATCTTTTCCTTTACATACTCT 126913 30 100.0 36 .............................. AGATAATTCTAAATTTGGTGGCGGTTCAACACGTGG 126979 30 100.0 37 .............................. ACTTTTTCTTCTACATCTTCAATTTTTTCTTCTACCT 127046 30 100.0 37 .............................. CCAGCTACAACATTAGAGAACTCTGCTATTGTTGATG 127113 30 100.0 36 .............................. ATCACATAGCTTAGCTGATAGGGAGATAATTTAAGA 127179 30 100.0 35 .............................. AGTTTGCTTGTTTTAAAACGTGTTTTACTTAATTA 127244 30 100.0 36 .............................. CAAGATAAAGATTTATTGCTAAAGGTTTTTCAGAGT 127310 30 100.0 38 .............................. CCCTTAAGCATTTTTGGAGGTGATTTTATGAGAACTTT 127378 30 100.0 37 .............................. CTAAGTTGCCCTGCAATATACATAGAACTACTCGACC 127445 30 100.0 38 .............................. ATATATCTAACTAACCGCAATACCCACCTAACAGCATA 127513 30 100.0 36 .............................. TGCAAAGACACATTTGAGCCGTTGAACTTAATTGTG 127579 30 96.7 36 .............................T GGCTCAACAAAGTAGACATTGACATACAAAGTTTTA 127645 30 96.7 36 .....................A........ GAACAATATATGAACTATCTGTTGCAAATTTCCCCA 127711 30 100.0 37 .............................. GACTTCTGAAGTATAAACTACGCTTTCAATAGTGTTG 127778 30 100.0 36 .............................. CAGATAATTAGTGCAAGTGCAACAGGTTTGGCAAAC 127844 30 100.0 37 .............................. ATTAACTTGTTTTGTACATATGATGCTAATTTTCCTG 127911 30 100.0 38 .............................. ATGATTTTTGTCGCTTTTTTGTCTTCTTTTTGTCGCTT 127979 30 100.0 39 .............................. AACAATCTATTCAATGCACTTACCAGCCATTCAAACATC 128048 30 100.0 38 .............................. AAATAGAAAAAGGCTTGAAAATCCAGCAGGATTTATAC 128116 30 100.0 38 .............................. TATTTTTTCCCAACATCAACCCAAAAATTAGCTACAAC 128184 30 100.0 38 .............................. ATGATTTTTGTCGCTTTTTTGTCTTCTTTTTGTCGCTT 128252 30 96.7 36 .......A...................... TCCCCTTCGCACACTGTAAAAGAGATGATCCCCTTG 128318 30 100.0 39 .............................. CCGCCATACTTCAATGCACTCTTGTCAGCTAATTCCAAA 128387 30 96.7 36 ..........C................... GAAGCTGCTATGCGAAAAGAAGCCCCAGGTTGGGGA 128453 30 83.3 9 ...............G....A......GGT TGGAAAAGG Deletion [128492] 128492 30 90.0 0 .....AG..................A.... | T,T [128506,128508] ========== ====== ====== ====== ============================== ======================================= ================== 46 30 99.1 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TCAATTTTTCTCAACTCCTTTGATTTAGATTATATACTACAGTGCCAAAAAATTGAATATCAATTTTGTATTTTATCCATTTTTTTGTTTTTTATCAGTTCAAAAAATATGCGAAGTCTATTTTTTGTCAAATTTTTCGGTTGGATTATTTAAATTCAAATTTTTATTTTGCTTAATATAACTTTGCAAAAATTATACATGGTGCGACAGGTAGCTTGAATTTTTATAATACTCAGATTAAATATAATTTCATTTTGACCAAAAGTCATATCTGTCGACCTGCGGTAGCAAAATTTTGAGGTTTGATTTGTATACGATTTCATATTTGCGGTGAGTGGGATTGCATGGTTTTCTGGCAGCAGCTGGATAGACGGAAGAGTTTAAGAGGCTTTAATCCTTTGATTTTTCTGGACTCTTTTGAGTTTTCCACAGATGTTTTAAAATAAAAACATTGACATGGGTGTATAAAGTTGATATAATAAAACTAAGCTTTCGAACGT # Right flank : CTTGGTTTAGAGGATGAAGAAAAATCTTAAAAACAAAAAAATAGCGCCCTGAATCCTATCATCCTCTTTTTGAGGATGTTCCTCACCTATCTGGTGAGAATTTTCGGATATCAGTGGCGCTAATGCCTTGTGAATAGGTTTCAAAACTGTTTATACTACAGTTACTTTTATCCACCCAGGAACTGTCCAAACCTGACCGTTCTTGAACACAAGCCGTCTTGTTTTTGGAAAAAGATCTGAATAGATTTTCAACTTAGTATTTATTTTTGAAAGTTTTTCAAAATGGTTCTTATTGAAAAATATACCCACTGTTTTTGAAAGATAACCCGTCGAAAATCCTATCTGAACCAAAAACTGATTTTCTTTAAGGGAGTCTAAGATAGTTAGAAGCTTTTGATATTCAGAAACAATCTGCTTTTGGTTATATCTGGAGTAAAAAGCTATCTCTTTTTGGATATAATACTTTGCAACAAATTTTATAACCTGCGCCAAAAATTCAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 142262-145473 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================== ================== 142262 30 100.0 38 .............................. AATTCTTAAGAGCAAGCAAAAATACGAGAGTAAAAGAG 142330 30 100.0 36 .............................. GTGATTATTGGGAAATCAAACATAATCCGATGGAGC 142396 30 100.0 37 .............................. GCGTATCCGATGTCGACATAGCTATTGATTCCGACTT 142463 30 100.0 75 .............................. ACAATTCTCTTTCTACCTTTGAATATCGCAAAGTTTGTAGCCTCTTTTTGATAACTCAATAACGTTTATATCTTC 142568 30 100.0 38 .............................. AATTCTTAAGAGCAAGCAAAAATACGAGAGTAAAAGAG 142636 30 100.0 36 .............................. GTGATTATTGGGAAATCAAACATAATCCGATGGAGC 142702 30 100.0 37 .............................. GCGTATCCGATGTCGACATAGCTATTGATTCCGACTT 142769 30 100.0 39 .............................. ACAATTTGCTCTTTTCTAAACCCTTTGAAATATCGCAAA 142838 30 100.0 39 .............................. CAGCAGTCTTTTTGATAACTCAATAACGTTTATATCTTC 142907 30 100.0 36 .............................. CTTACAGTGAAATTCTTAAAATATCTAAGTTTTTCA 142973 30 100.0 37 .............................. GATCAAAAATTTAGAAAATATATCCTTTTTCGACCAA 143040 30 100.0 36 .............................. AATCCCATACTTCCCTTTCTCTGTATTCAAGTTTTG 143106 30 100.0 37 .............................. AAAAGAACCGCTTTGCTATAACTTGCACCTGCTTCAA 143173 30 100.0 36 .............................. CCCTTATTGTCTGTATCGGTATATTAACCTTTCTGA 143239 30 100.0 36 .............................. TTCTTGTTGTGCGAAAAGTAAAGATAAGAAACGAAC 143305 30 100.0 36 .............................. AATAATAAATTATCTTATTTATATAAAAACTAATAT 143371 30 100.0 44 .............................. TTGTGCATTGTGCTAAACCTGGTTAGTAAAAATTTTGTGAAAAA 143445 30 100.0 38 .............................. CCTGTTTTTTAACTGCGGCACTGCTTTTAAGATAAATT 143513 30 100.0 38 .............................. CTCTGAGATGTCAAATGGGTTTATATAGTTTTCACTGT 143581 30 100.0 36 .............................. TGCTGCAGGATTAGGTGTTGTTGCAATTGCAACTGG 143647 30 100.0 36 .............................. GATATTGAGAAGGACTCATGTCAACAGCTGAACAAA 143713 30 100.0 38 .............................. TCTTTTAAAAACTCTAAAGCCTTTTTGTCGCCTAACAA 143781 30 100.0 38 .............................. TTTCTCTTGCTGCTGAGTATCATTATCCGCTGTTTGTT 143849 30 100.0 36 .............................. TGATTAAACCTTCATTATGTAGGTCGATTAACCATT 143915 30 100.0 36 .............................. CCTACCTTCCCTATTGTCTTTTTTATGCCTTCCACG 143981 30 100.0 36 .............................. ATTGTTCTTTAATACCTGCTTTTTATGGCAGGTCTT 144047 30 100.0 36 .............................. GTAACTATTACGCTTAACACGTCTTTAGCCATACCC 144113 30 100.0 36 .............................. CTTTGCGAACTAACTATAATGTCGTAACCAAATTTA 144179 30 100.0 36 .............................. AAAAAAATTCTGATAACCTCTGCTACACTTTTAATA 144245 30 100.0 37 .............................. CTTTAACCGCGAAATAAGTCTTACCAGCCCCACGCTT 144312 30 100.0 38 .............................. TATATAAGCTTTATCTGTCAACACCTTGCACTTCAACT 144380 30 100.0 38 .............................. TTGCTTCTTTATATTTTTTGTATCTTTCTAAGTCTTTT 144448 30 100.0 37 .............................. CTCATTTGCTTTGTAAAATCATAATTCAACCTTATAG 144515 30 100.0 37 .............................. GTTGTCAATCTCGGCGACATAGTGATTCCACGAGGAA 144582 30 100.0 37 .............................. GTGAAAACGAGATGATTTGCATAACAGGCTGGCGTGA 144649 30 100.0 37 .............................. GGTGGCTTGGGCTCTGCATCAAACAACTTAACAATGT 144716 30 100.0 36 .............................. CCCATGGAGTCAATAGTTTCTATAATCCTGAGAGAT 144782 30 100.0 38 .............................. ATTACACGCTCATCCAATGCTTTGTTAAACATATCAGC 144850 30 100.0 36 .............................. CAAGATGGTTTGCTTGATAAAGACAAGCTTAAAGAC 144916 30 100.0 35 .............................. AAAAAGCCGGCTATTGCCGGCTTTTTGCTTAATGT 144981 30 100.0 36 .............................. AGATATTCCTAAAGCTGAGTATATAACTGAAGAGTC 145047 30 100.0 36 .............................. CCCCTGCAAACTGTAATTTCTTCGTCTACAACCTCT 145113 30 100.0 38 .............................. TTGTTATAGAACCTAACCTCTCTTATTTGTTCACCCAA 145181 30 100.0 36 .............................. CTGTTCTATCTGTCCATGGTGCGTTCTCTTTTGCAT 145247 30 100.0 36 .............................. TTGTAATGCTTAAGTGTGTGGAAATTTTCCACTCAA 145313 30 100.0 35 .............................. ATAAGTTGCAGATAGACATTTGCAAAATTGTAAGC 145378 30 100.0 35 .............................. CTTGTCCTGCCCTTCCTCAACCAGATATGTGCCTG 145443 30 90.0 0 ....T......C.................T | C [145454] ========== ====== ====== ====== ============================== =========================================================================== ================== 48 30 99.8 38 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : CCTAATCCACACTTGTTGCAGATATTATCTGTAAGAAAAAAATTTCTTGAGGGAAGTGGTGTTTTGTAAGCTAATTGTTTCATTTTGCCTTAAAGTCATATTATTTTGACCAAAGGCGCAGAAATTTTAAGTTTTGATTAGTCTGCATTTTCAGTTTTGTGATATGTGAGCTTACCTGATGTTCTGGCAGCAAGATACACAAAAGAATTTTGCTTTTGAGAATTTATGCAATGAAATTGTATAAAGTCTACAATTTGACCAAAAGTCATATCTGTCGACTTGCGGTAGCAAAATTTTGAGGTTTGATTTGTATACGATTTCATATTTGCGGTGAGTGGGATTGCATGGTTTTCTGGCAGCAGCTGGATAGACGGAAGGGTTTAAGAGGCTTTAATCCTTTGATTTTTCTGGACTCTTTTGAGTTTTCCACAGATGTTTTAAAATAAAAACATTGACATGGGTGTATAAAGTTGATATAATAAAACTAAGCTTTCGGACGT # Right flank : TTGCTTCTCTTCTTGTAATTTGCCAATCGCCTTTGCTACCCTCTCCTTAAACTTCGCATAAAATTTGACCTTTCTTAAAGCTTTCAAACAGATAAAATTAAAATTGTAAAGTTTAAAATTGGCTGTTTGAAAGAAGGCAGAAGCAAGTGGAAAACTTTTTTGATGTCAAAGGTTCGATTGTACAGGCATACATCGTTTGCAAAAGACAGGCATGGCTTTTGTCACGAAACATAGGACCATCACCAGATAACCCCTTTTTGGAGATAGGCAAGTTAATATCGCAGGAGTATTACAAGCATGACAAAAAAGAGGTATACTTTGACGGTGTGGTCTTAGACCTAATCCGCCACGAAAATGAGGTTTTGCTGGTTGGGGAAATTAAAAAGTCTTCAAGGTCAAAAAACGCTGCAATGACACAGCTCAAATTTTACCTCTACAAGCTTTTTAAAAACAACATAAATGCCCGTGGAAAGCTTTTAATACCAGAAGAGAAGAAGACT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 154694-154989 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 154694 30 93.3 36 ...T.......C.................. TATTGTAGTTTATAAAGCTCTGCGGGGTTGAAAATA 154760 30 100.0 36 .............................. ATCAATTTTGCCGGTTCAACGACTGCGAAATCTACT 154826 30 100.0 38 .............................. GCGCAAATGAAGTCTTTTAAAAATTCTGAAACCTTCTT 154894 30 96.7 36 .............................G CATTGATGCTGGCCTCCCGGCTGCGCTCGGAACGAA 154960 30 93.3 0 ...T.......A.................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.7 37 GTTAGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TCCCATTTTAAAAACTTTGCACCTCCCCATTAATTTATGGAATTGCATTCAATCACTTAATTCTTGGCTATTTTACTTAGATATTCTTTGCAAACATATAAAATTTAAAGAATTTGGATTATTGCTATAAATATTATACACTAATAATTTGTCAAAAACATCAAAAACTTATAAATTGTTTGCAAAACAAAACTTTGTATTCTGAATCTATAATTTGCTTATTTATTTACAAAACTCTGTATTATAATTTATTTTGACCAAAAGTCATATCTGTCGACCTAAGGTAATAAAATCTTGAGGTTTGATTTGTATACGGTCTCAAGGTTGAGGTGTGTAGGATTGCATGGTATTCTGGTAGCAGCTGGATAGACGGAAAGGTTGATAGGGTTTTAGTGGTTGATTTTTCTGGCTTTATTTGAGTTTTCCATAAATGTTTTGAAATAAAAACATTGACATGGGTGTATAAAGTTGATACAATAAAATCAAGCTTTCAAACGTGT # Right flank : CAAGTAGCTACCACAGCTAAGGGCTGTGGTTTTTGTTTTTTACAAGTGGTATAATAAAAGTGTAAAGCAAAAAATTTTAAGCTTTTTGTGTTATGAAAGTTTGCCAAAAAAGGAGAAATTCCAATGCGCGATAGCCTTCCACCACAAGAACATGATTCAACTTTCAAGTTTTTGTTTGAACACCCTAAGGATATTCTTTTCCTTATCAAGGATGTGATTGGCTACAGCTGGGCAAAAGACATCCAAGAAGATTCAATTGAGCTTGCAGACAAAGAGTTTGTCGGTGAAGATTTTCTACAAAGAAGAGCAGATGTTGTAGCAAAAGCAAAACTAAAAGACAGGGAAGTGTACTTTTACATTATCATTGAGAACCAGTCAACTGTTGCAAAAGACATGCCAGAAAGACTTCTGCGATACATGATACTACTGTGGGCAAAGAAGATAAGAGAAGGGGTAGAAAAACTTCCAGCAATTATTCCCATAGTGACATACAATGGGCT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 156643-157668 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 156643 29 100.0 37 ............................. TTGCTAACGTTGCTACCTCTCTTGTAAGTGTTCTTGA 156709 29 100.0 36 ............................. AGCTGCCCATCCCATGTCACATACCCTGGTGGTTGT 156774 29 100.0 37 ............................. AACTTTTTGTCTTTCTGTTATAAAGCGCCAGCAAACC 156840 29 100.0 40 ............................. TTCAACATGAGCGTTTAGATTTTAGACACCCTATGGGCGA 156909 29 100.0 36 ............................. GGTAGTTGATTTAGAACTAAAAGTATCAAATCCTTC 156974 29 100.0 36 ............................. ACATCTTGAATTTCTCTCAATTTTGTAATCAACATC 157039 29 100.0 38 ............................. AAATTATGGCAGCTATACAAACAGCTAATACAACTATA 157106 29 100.0 37 ............................. ATTTAATTGTAAAGGCTGTAATTGACTTTGAACCAGT 157172 29 100.0 37 ............................. TTAGTAGTGTCGTCTTTTCTTTCTTTTTTGATTGTAA 157238 29 100.0 38 ............................. TTCTCTCCACGTGAAAATTCATACATTAATTCACATTA 157305 29 100.0 36 ............................. ATGAATGTGCCTATTTCGTCCTCATTTACCTTCCTA 157370 29 100.0 38 ............................. CCGTTAGAGTGCTTGAAGAACCCGGGAACTCCTTCAAA 157437 29 100.0 40 ............................. GGGTATGTTGCAAGCAGGAAATCTCTGTACTCCCGCCAGA 157506 29 96.6 37 ............................T TTCTTTCTTCCGTGCTCAGTATAGAAACAATTTTTTG 157572 29 100.0 38 ............................. CTCTCAAGCCTGTCCAACTGCACTGCTGTCCACATTGG 157639 29 96.6 0 ............................A | T [157665] ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.6 37 TTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : AAAGTTGATTTATTTTTTAACCTTAAAACTAAATCCAAGCCTGCTTTAGATATTATTTTTTAAGAAAATTTTTTTGAGTGAACTTATTATTTTGTAAGCTAAACTTTTTACTTTACCCTAAAAGGCATATTATTGTGAACAAAGGCTTAGAAATTTTAAGTCTTGAGTAATTTGCATTTTTAATTTGTGTGATACAATAGCTTATAATATGCTTTTTGAGAAAATATACAATGAAGATGTAAAAAGTTTACGATTTGACCAAAAGTCATTTCCGTCGATGTCAGATAGCAAAATTTTTTGTTTTGATTTGTATTCGGTTTCATATAGCAGTTGCATAGCTTTGTTAGCTTTCCTGGTAGCCACTGGATAGACGGAAAGCTTTGATTGGCTTCTATCCCTTGATATTTCTTGCCTCTTTAAAGTTTTCCACAAATGTATCAATAAAAAAACATTGACATGCTTGTATAAACTTGATATAATAAAATTAAGCATTCTAACGA # Right flank : AAAAAGCCACAGGCACTATTGAGTTTGTATTTTGATTGCCTGTGGCTTTAATTTTTTAGTCTTTACTTACACCAGTTTGACTTAATTTTCTAATTCAATCAATTTATTTTTGTCCAAATCTATTACAGTTTCACCTCTTTTTATCTTATTGCAATCATCCTCATATTTGTCATGCTTGAGCCAAATCTTGTATACATATAAAATTCTGCTATTATAATCAAAATCATAAGCGCATCTAAATATAAGCTTATTACCGTTTGAAGACCCCTTATAAATATATGGTTTATTTATTCCCCAATTTTCATTGTGCATTAGCTCTCCTCTTAAACCTTGATAATTCTTATAATCCTCAAAAAACAAACTTGCTTTCTTTATGAGTTCCATCAGCTGGTTCATAATAAATTTTTTATTCTGCTCATCTTTGTTAATTAAACTATTTACATCTTCACTTACCTTTATTGTTGTGCTAATGTAATCCTTAAAAATAAATTGCGCAAAAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 5 169107-172940 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 169107 30 100.0 36 .............................. TCCTAACAGTATGAAGAATCCTTATACCCAATAGGC 169173 30 100.0 38 .............................. ATTGTTAGTTTGACATTAATCCTATTGGCTTTTATTTC 169241 30 100.0 39 .............................. AACATAACGACAAAGGAAGGATTCTTGACTACATCGATG 169310 30 100.0 39 .............................. GTAATCCTGCGTGCCTTCACATTCGTGAATACCTCTCCG 169379 30 100.0 36 .............................. ACATAAATTTTAAGTTTGCTGTTTCACCGTTTCTGT 169445 30 100.0 38 .............................. CCAACTTTACTCGTTCCATTTGTTCTTGCACATATTGT 169513 30 100.0 38 .............................. TAAATTTCTTTGCTTCTGGTAATTCTGAACTTAAAATC 169581 30 100.0 38 .............................. ACATGCTTGTATAACTGCTGGACCTATCTTTCCATCCT 169649 30 100.0 38 .............................. CCTTAAATTGAACATCAAACTCCAACTTGGTCATCCCT 169717 30 100.0 36 .............................. TTATTAACCCAACCATAAATATTACCAAAAACAAAC 169783 30 100.0 36 .............................. AAAAGTAATGTCTTGTATTAAAAAAGAATTAATGCA 169849 30 100.0 37 .............................. GCCAATTTTTGCACCATTGGGGATAGGGCATCCCCAA 169916 30 100.0 38 .............................. AAGCCTAACTTATACGTCGTCCACTCATCGACAGGTAG 169984 30 100.0 37 .............................. ATTTTTGTATAATGTGCATTTTACAGTATAATCAAAA 170051 30 100.0 38 .............................. ATACAATTCATATTCAGCTCCGTATTTTGTCATAAGAA 170119 30 100.0 36 .............................. CCTTTTATGCTTTCTCCTTTCTCTCTAAACTAACTT 170185 30 100.0 36 .............................. GCAACAGGAGTTATTGCTGGTGCTATTGCAACTGCT 170251 30 100.0 36 .............................. TGATAAGTTAGACAGAGATGTTTCAGAAATGAAGAA 170317 30 100.0 38 .............................. TCTATAACATAGCCCATTCCCATTTCATTCATAGAATT 170385 30 100.0 38 .............................. TCGTAACCCATACCATACTAATATCGCAGATAACCAAA 170453 30 100.0 37 .............................. GGTATACTCAAGTCAGGTGGAGTTATCCTATCCCCAG 170520 30 100.0 36 .............................. ATTTCAGTCTCTGACATAGCTTCTGATGTTGTTACT 170586 30 100.0 36 .............................. AAATATTTTATTTTGCAACAAAAAAAAAGAGCAAGG 170652 30 100.0 38 .............................. TGTTTTTAACAAAACATTAAAAACCCTAAATGCTATAG 170720 30 100.0 39 .............................. ATTTTCTCCTCACCTGTTTCCAAAGATTTGAGCCTGCTT 170789 30 100.0 38 .............................. TGAACAAGGGCAGTATCTTTAATTTCATCAAATAAATA 170857 30 100.0 38 .............................. GGTTCTGCATTATTGAAGTTTTGACGGGCCAGCTGCAA 170925 30 100.0 39 .............................. TGCAAGATTTTTTCTTCGTTCTGGTAACTTGTTAAGATG 170994 30 100.0 36 .............................. ATATATTTTGCTATTCTTAACAACCATCGTAACCCA 171060 30 100.0 38 .............................. ATGCTTTTATCTTCTGAATCAATGTTGGAGAATTGTTT 171128 30 100.0 36 .............................. CCATTACTTGCTTTTTGTGCAGATAAAATACCATGT 171194 30 100.0 37 .............................. TTTACACAGATTTTCCCGGAAAGAATTTGGTTCCCAA 171261 30 100.0 36 .............................. TAATTAAACCATACGCTTTCTGTTCTCTGTTGATAT 171327 30 100.0 37 .............................. TTTAATATTTGCAGCAAGTATTTTTCAAACGTCATAT 171394 30 100.0 38 .............................. CTTTTGCTTTTTCCCATGCATTGCAAGCATAATAAAAT 171462 30 100.0 36 .............................. ACCGCTATTTGTATTACAATATTCTATGAATTCTAT 171528 30 100.0 32 .............................. ATACATTCTCTCTTCTTCTGTAACATCTCTGC 171590 30 100.0 36 .............................. CCATTATGCTGCCTGTCCATGTGTAGCAAACCACCC 171656 30 100.0 37 .............................. TACACTCCATCCCGCCATGTCATATAAGTAAATTCTG 171723 30 100.0 36 .............................. GTATGATGTTTAGGTATTGCCGGCAAAATAGTTCAC 171789 30 100.0 36 .............................. CCTGCAAGTGCAACGTCACCCAGTGCAAGAACCCAT 171855 30 100.0 36 .............................. TTAAGTCTCCTCGTTTTAGCCCTCTGAATAAAATAT 171921 30 100.0 36 .............................. ACCAGATTCACTATACAAAGGAGCAATTGACATACA 171987 30 96.7 33 ...A.......................... GTATTATTAAACACATTGTTATTTCCTGTCTTT 172050 30 96.7 37 ...A.......................... TCCTGTTACAACACCATGGTTAACAGCAGCTGCATCG 172117 30 96.7 35 ...A.......................... GGAAAATAATTATCGAAGCCAATGGCGATTACAAA 172182 30 96.7 36 ...A.......................... TTGCATATGCGCTGTCTGGAATCTTATTATTTGTCA 172248 30 96.7 36 ...A.......................... TAGCTTCCCCAACTCAGTTGTTGTGATTCTTTCAAG 172314 30 96.7 38 ...A.......................... ACTTCCTCTTGCAGGTTAGGAAATTTGATAGCATCCTC 172382 30 96.7 35 ...A.......................... TAGTTTTTGTAAAACCTATATACTGTCTCAGCTAA 172447 30 96.7 35 ...A.......................... TAGTTTTTGTAAAACCTATATACTGTCTCAGCTAA 172512 30 96.7 37 ...A.......................... ATAAAATAAACATTTACATATAAGGTATTAAATTCTG 172579 30 96.7 36 ...A.......................... ACAAACAGCAACAAGAGTGGATTATTAACAATCACA 172645 30 96.7 38 ...A.......................... AGATAGTGCGTAAAATCAAAAAATATAAAAATCTGCTT 172713 30 96.7 36 ...A.......................... GCATATGATGCTGCCGTTAAAAAAGCTCCTGTTATA 172779 30 96.7 36 ...A.......................... CCTCATAATTCATTACATATTCTATAACATAATCTT 172845 30 93.3 36 ...A.........................G CATTGATGCTGGCCTCCCGGCTGCGCTCGGAACGAA 172911 30 96.7 0 ...........A.................. | ========== ====== ====== ====== ============================== ======================================= ================== 58 30 99.1 37 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : CAGAGAAGATGATTTTGAAAGGGTACAATGACGAAGAGATAGCAGATATAACAGGTCTTTCACTTGAGAAGATACAAGAGATACGTGCAAGGCTGAGAAATTAAAAAAAGGCTTTTGAAAAAGAAAGGGAGCCGACTTTTTTGAAGAGGTTGGCTTCCTTTTTTGTTTTGCTGCTGCAGGTCAAAAGCGAACAAGAATAAACTGAACATAAATTTTTGAGAATTTATGCAATGATGCTGTATATAGCTTGCAATTTGACCAAAAGTCATATCTGTCGACCTCCGGTAGCAAAATTTTGAGGTTTGATTTGTATTCGGTTTCTGGCTTGAGGTGAGTGGGATTGAACAGGCTTCTGGCAGTACCTGGATAGACGGAAAGGGTTGATAGGTTTTTATAGCTTGATTTTTCTGGCTTTATTTGAGTTTTCCACAGATGTTTTGAAATAAAAACATTGACATGGGTGTATAAAGTTGATATAATAAAATCAAGCTTTTGAACGT # Right flank : CAAGTAGCTACCACAGCTAAGGGCTGTGGTTTTTGTTTTTTACAAGTGGTATAATAAAAGTGTAAAGCAAAAAATTTTAAGCTTTTTGTGTTATGAAAGTTTGCCAAAAAAGGAGAAATTCCAATGCGCGATAGCCTTCCACCACAAGAACATGATTCAACTTTCAAGTTTTTGTTTGAACACCCTAAGGATATTCTTTTCCTTATCAAGGATGTGATTGGCTACAGCTGGGCAAAAGACATCCAAGAAGATTCAATTGAGCTTGCAGACAAAGAGTTTGTCGGTGAAGATTTTCTACAAAGAAGAGCAGATGTTGTAGCAAAAGCAAAACTAAAAGACAGGGAAGTGTACTTTTACATTATCATTGAGAACCAGTCAACTGTTGCAAAAGACATGCCAGAAAGACTTCTGCGATACATGATACTACTGTGGGCAAAGAAGATAAGAGAAGGGGTAGAAAAACTTCCAGCAATTATTCCCATAGTGACATACAATGGGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 6 174657-175254 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 174657 30 100.0 37 .............................. AGCTATTTAAATAGTTCAATAGTTGTTGCTCAGCAGA 174724 30 100.0 35 .............................. AATAGTTTTGCTATACAACTTTTACACCTCCTGCA 174789 30 100.0 36 .............................. CCTAATACATCGTTAAAAGCCTCTCTGTCAATTTTT 174855 30 100.0 36 .............................. CCTTCGGGGTTAATTATAAATCAAAACTTAGAAGGA 174921 30 100.0 38 .............................. AGGAAAGGATGGAGAATAAAGATAGTGTGATTGAGGTA 174989 30 96.7 38 .............................A CAACGTATTGGCTTTGACGTCACAAAAGCTTCTCTCTT 175057 30 96.7 38 ...........T.................. TTATTCCAGATACTAATGTTAAAATCTGTGCTATGTCT 175125 30 76.7 34 .......T...T......AAC.....T..T ACAAGATTCATTCCTTGCTATGATTTCCTCCAGG 175189 30 83.3 6 .............T.......A.C...G.T GGAAGA Deletion [175225] 175225 30 73.3 0 .G.....A...T.TTG...T.A........ | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 92.7 33 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : CCTAATCCACACTTGTTGCAGATATTATCTGTAAGAAAAAAATTTCTTGAGGGAAGTGGTGTTTTGTAAGCTAATTGTTTCATTTTGCCCTAAAGTCATATTATTTTGACCAAAGGCGCAGAAATTTTAAGTTTTGATTAGTCTGCATTTTCAGTTTTGTGATATGTGAGCTTACCTGATGTTCTGGCAGCAAGATACACAAAAGAATTTTGCTTTTGAGAATTTATGCAATGAAATTGTATAAAGTCTACAATTTAACCAAAAGTCATATCTGTCGACCTGCGGTAGCAAAATTTTGAGGTTTGATTTGTATACGATTTCATATTTGCGGCGAGTGGGATTGCATGGTTTTCTGGCAGCAGCAGGATAGACGGAAGAGTTTAAGAGGCTTTAATCCTTTGATTTTTCTGGACTCTTTTGAGTTTTCCACAGATGTTTTGAAATAAAAACATTGACATGGGTGTATAAAGTTGATATAATAAAACTAAGCTTTCGGACGT # Right flank : CAGTATCAAAATTTGTGCTTTGTTGCCAAGGCAGTAGTTTTTGCCCTTCCCCGTTGGCGGTTAAAATGCAAGCGTATTTTCAACTTTATCTTGCGGTATATTCCTGTGCTGATCATAAGAGTGGCACATCCCTAATTTAACTTCTTGGATATAATTTTTATAACCTGTGCCAGAGATAATATTCTTTCTCTTTAGATTCGCATAAAAATTGACCTTTCAAAAAATGATGAATATGCATTAAAATTTTTTCTCTGCGCTTTGCAGCAGTAAAATAAGGGGGAAATATAAACTTGCAGCGAAATTCATTTCTTGAAAAGTTTTCAACATAAGATACCGCCAGTATGTACTCCAAGAAGAAGGATTAAATTTGTGGTGGGATTTCAGAATGCCAACTGAGGACGATTATTTTACACTATTTGAGTTATTCAGCGTTCTTAAGCGTTCTCGAATTGTCTTTAAATCTCTGATGGCTGCAAAAAGATACTTTAAAATAATTTTTA # Questionable array : NO Score: 8.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 7 365690-368145 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 365690 29 100.0 37 ............................. GAATTGGCAAAGAGGGCAGAGATATACAAACGAGCAA 365756 29 100.0 38 ............................. TCAAGAATAGATTTAGCAATGTTATCAATATCAGGGAA 365823 29 100.0 37 ............................. GCGAGTTGGCAGTTTACATAGATGTGTATGTCAAAAA 365889 29 100.0 37 ............................. TTTAGAAACATCCATATTCCATTACCCCATTTGAGCG 365955 29 100.0 36 ............................. AAGATTATTATCCTCACGAAGTTATAACAAAAATTA 366020 29 100.0 36 ............................. GATAATAAATCCACGCCCAATCCCAGCCTTGCTGAC 366085 29 100.0 36 ............................. AAACACTCCATAGCAGGTTTGACGGCTTTGATTGTA 366150 29 100.0 38 ............................. AACGAATATATTCAATTGCCACGGCCACCATTAATAAG 366217 29 100.0 36 ............................. GGGGGAATATTAGAGCATCCGGGAAAACTATCACCG 366282 29 100.0 36 ............................. CAAAGACAACCCTGTCCGCTGGGGACAGATTGCGAA 366347 29 100.0 36 ............................. GCTATTATTTTATACTGGCCTGAAATTGTGGAACGA 366412 29 100.0 37 ............................. GCTTCAAAAACAGGTTTATATGCATTTGATGTAATTG 366478 29 100.0 36 ............................. TGTAGAATAGTGCAAGTTTTCTTATCATCGTTTCTA 366543 29 100.0 37 ............................. TGTACTAACTGTTCTATGCTCTGTGCAAACTTACGCA 366609 29 100.0 36 ............................. TTAACAGTCAAACTCTATATTGTGCCTGTTGGTGGT 366674 29 100.0 36 ............................. ATAATAATCGATATTACTCCGGATATGACGCAAGAA 366739 29 100.0 36 ............................. TTGTAATTTGTTCACGTTCAATTTCTTTGCTCTCTT 366804 29 100.0 37 ............................. TACATGCATTTTAAAAATTCTGTTCTGGGCAAATATG 366870 29 100.0 37 ............................. AATTAAATTTGCGTTAATGTTGTTCACGATGTTATAA 366936 29 100.0 37 ............................. CTAACAAATTTCTTGCCTGCAGCTTCCAAGCTTGCTT 367002 29 100.0 37 ............................. GTAATATTTGGGACATTAACAGGTTTGCTGAGTGAAA 367068 29 100.0 38 ............................. AATTATTTATTAAATTGAGTTTTGAATTCACTAAGCGG 367135 29 100.0 36 ............................. TGGGGATGGTCAGGGTCTCGGAAGCTCTTGTGCCGT 367200 29 100.0 37 ............................. TTACGTTTTTTAGCCGTCCCATCACGCAGTTAAAGGT 367266 29 100.0 36 ............................. GTTTTAATGTTATTTGTGGGGAAATTTGCAACAGAT 367331 29 100.0 37 ............................. GATACATCTGCTACAACAATTGCATTTTCATTTGTTT 367397 29 100.0 38 ............................. GTATATCTATCTTTTTTCTCAACTGGGATAACATTTTT AT [367418] 367466 29 100.0 37 ............................. GATGTTTGCTGCAAGTGTAAAAGAAACGACAGGAGCA 367532 29 100.0 36 ............................. ACGGTACAAGGACGTTTTCCTCACCAGCCAGTATTA 367597 29 100.0 35 ............................. AAAGTTGAGAAATTAACTGACAAGCGAAGAAAGCA 367661 29 100.0 37 ............................. AAGACACTGGCATGTGTAAAAAGAGAATTACAAAACG 367727 29 96.6 35 ............G................ GCTCTTATTAACAGGTTTTTAGTCGCCATCTTCTT 367791 29 100.0 37 ............................. GGTCGAATACCCCATTAGCCATGCCGTTATGAGACCA 367857 29 100.0 36 ............................. TAGACAAATGCAATGGTGGTAGTGAAGCGACAGCAC 367922 29 100.0 36 ............................. ATTGCTGCAATAGCTGGTCTTGTCGGGCTTACTGTA 367987 29 100.0 37 ............................. ACTACAACCGTACCAGATACACTCAGACAGTACTGTC 368053 29 100.0 36 ............................. GTTCAAGTTCTTTTTCATTGACTAGTTCTGTGTACG 368118 28 72.4 0 ..................-.C..TCCTGT | ========== ====== ====== ====== ============================= ====================================== ================== 38 29 99.2 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : GGAATTTGAACAGGAAGTTAATAAATTCTTCAGCAACAAAAAAGATTTATCTTTTGCTCTTTTCAAAAAAGATGTATTGTCTAAGTTTGTAGTAACAAAGCCTTATGAGGGTGAAAAAGATAGAGTTTATGAAAAATTAGGAAAAGGACTTGAAAAAGACACAAGAAAAATACTTAAAAAATGGATTTCTGAAATTTTTTCCTCATCAAAAAAGTATGATAATGAATTTGGACTTATAGTAGAGGAAAATGATTAAGTTCAAAGCACTGTGAAGTGTTAATAAATGACTACTATTTAGAAAATTTAACCATTTTGCAGCGAACCTAAGAAAGTAGTGCACCAAGCAAATATCTTGATTCTCCTGCAAAAGAAGCTAATATAACATTTAATTCCAATATCCTATTCCCCCTTTGCTGCAGATAATAGTGATTGCATGGAAAAATACAATAAGGTATAATTATAGCCAGTAGCTTGGTTATGAGTTTTTTTAGAAAAGTGGG # Right flank : TAATGAACGAAAATGAGGAAAAATGAGCTGAAATGAGATTTGAAAAGATAAGGTGCCTCCTGATAAAATTAATAAAGTAAGTTGTACAACTTACGACAAAACACAATAAAGGAGGTGCCTACCTTGAAGTATACACAAAATGAGAAGATATTACAAGTCACAGAAAGGACTTTGGTTGTAGGAGTAGATATAGCAAAGGAAAAAAATGTTGGTAGAGCATTTGACTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAAAACAATAACGAAGAGACTTGTCAAGAATTTTGTGTCTGAGTAAAGTAGCGTAACTGGAAAAGTTGGTGAATATCATAAATGTGAGCTTTTATCATTGGAACAGGATTCTTCCATTTGGTTTACTTTAGATTTTCGCGTTGCAGGTATATGTTGATTTCTAAAACATCCACTGAGTTAAAGTATCCGCCCAATTTTATTCTAATTTTTTCATTTAGACTGTTAACACTTTCTACAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 8 382138-378633 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACM01000001.1 Caldicellulosiruptor danielii strain Wai35.B1 N913DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 382137 29 100.0 35 ............................. TGTTTGCGACAACCAATCCAGACAGCCCTTATCAT 382073 29 100.0 38 ............................. ATTTTCTCAGCTAAGTATTTTGCTAATTGCGAGTAGTC 382006 29 100.0 37 ............................. TAAGACTTGTGTTTGATTTCCCGACACATGCAGCAAA 381940 29 100.0 36 ............................. ATTGTAGGATATGTAGCTTATTTTAAACTTGTTAAT 381875 29 100.0 37 ............................. CAAAAGCAAAACAACAACATGACTTATATTTGATTTA 381809 29 100.0 35 ............................. GCTGCTGCTGTGCTTTTGATACTCAGGTATTCAAA 381745 29 100.0 36 ............................. TCTTTTTGACAAGTATTCAACAGTCAGGTTACCAGT 381680 29 100.0 36 ............................. CAAGCTCGACAACCACAACCCTGCCGGCATGGTTTT 381615 29 100.0 37 ............................. ATAATGAAGCCGGGCTTTGCTGCCCGGCTTTTTGTGT 381549 29 100.0 36 ............................. TAGGATAGAAAAAGAAGACGTTATCAAAATAGAAGG 381484 29 100.0 37 ............................. AGAGACATTCAAGAACAATGCAGCATATATTGACTAC 381418 29 100.0 37 ............................. CTGCCATGCAACAACCAAAGAGCAGTTTGATAAAGTA 381352 29 100.0 36 ............................. GATAAGAGAACCTAAATTTAAAAAACTTGCAGAACA 381287 29 100.0 36 ............................. TTTACATTTGAAATTGGTACTGTTACTGGTGAATAT 381222 29 100.0 37 ............................. CGATGATAAGAAAGCTACACTTGAGATTATTTTGAAT 381156 29 100.0 37 ............................. ATTCATAGTTACGATAAAATTGAACTCGAAAAGGTTA 381090 29 100.0 36 ............................. CGAATGATGAAATCAAGTCCAAGCTTGCAGATCTTT 381025 29 100.0 38 ............................. AGAAGAAATATCTTAGCTATGAGTGCTCAACAAGAAAA 380958 29 100.0 40 ............................. TACCCGACGATTGGGAGCAGAAGATAAAGGAGATTGAGAC 380889 29 100.0 37 ............................. CTTCATCAACATAATCAAGAGGAAGTTTCTGATACTT 380823 29 100.0 38 ............................. TGGTAGGGTTAGATGAAATCTATGGGTATATTATGAAC 380756 29 100.0 35 ............................. TTTATAACTATGAAGTTTGCGCTGTTAACTGTGCT 380692 29 100.0 37 ............................. AAAGCTCTGTTGTATCTTTTATTAGCCACCATTGTTT 380626 29 100.0 36 ............................. TCTTGTCCTCAAAATTTCACCAGATTCGTTGTAATA 380561 29 100.0 36 ............................. AGCAATGCCTAAGTCCTGAGTTGCAGGAATTATGAA 380496 29 100.0 36 ............................. ATCTATCACGCTTACCCTGTCGCCCAACAACAATGC 380431 29 100.0 36 ............................. TTCTCAATCTGGTCTGCGAATGTGATAGCCATTGGA 380366 29 100.0 37 ............................. AATCTTCAAAAAATGATTGATGAGGAGGAGATGAAAA 380300 29 100.0 36 ............................. ACTCATAAGTAAGATGAGCAGGCTTTATCTCATTCA 380235 29 100.0 38 ............................. TGCCAATACTTAATAATCAGTAAAGGTATACCTATCAC 380168 29 100.0 36 ............................. AATTTCACCCATAAGCTCATAAGAATCTTCAGCCTT 380103 29 100.0 37 ............................. GAATACCTCTTTGTAACGTCTCAAGCCTGTTTCCTTA 380037 29 100.0 39 ............................. CAAGTTTCTACAGGTCCCTGTAATTGGTACAGTCAAAGC 379969 29 100.0 36 ............................. CTCATTACAACTTCCTTACACTTTTGCTTCCTAAAA 379904 29 100.0 37 ............................. CAATGTCGCTAAATATAACAAGCATATAATTGCTCAA 379838 29 100.0 36 ............................. GAGGAGGTAAGCACTATGTTGACAGTGGTTCAAATC 379773 29 100.0 36 ............................. ATCTTCTCTCCAGAAGACTTGAGTTTTTAGCTTTAA 379708 29 100.0 36 ............................. AAATGAATCTTAGATTGACTGCGGCTGGGGGAGAGA 379643 29 100.0 37 ............................. CATAGTACCAGTCTTCACCTTCTCCCCTGCGTTCAAT 379577 29 100.0 37 ............................. CCGTTTCCCTAATGTTGAAATCTTTTGTTAAAACTGT 379511 29 100.0 35 ............................. TTTGTGCATTTTTCTCGACAACAATATCTATTATT 379447 29 100.0 36 ............................. GAGATGAAGGTATGATAAAAAAAGTTATAAAAAAAG 379382 29 100.0 36 ............................. CTTATCCTCACGTTTAACCCGATTTCAGCGTTACAT 379317 29 100.0 37 ............................. CTTTTGTAGTTGAAATTTGCGTGAAGTGCAATGCTTG 379251 29 100.0 36 ............................. AAAGTTTGTGAGTGAATCCGCAACTTTTTTAACGAC 379186 29 100.0 37 ............................. CAAAGTTTGTGAGTGAATCCGCAACTTTTTTAACGAC 379120 29 100.0 37 ............................. TTAAGCATTCCTCTGGGGTTTGCTTTGGCTAATGTAA 379054 29 100.0 37 ............................. CAGGGTTGCCTCTCCACTCTACTTCGACATCTCTTCT 378988 29 100.0 36 ............................. AAATCTCTCAATGATGACTTAGCATGGAGAGTTCAA 378923 29 100.0 37 ............................. CATTAATATAATTCCAAAATGACCTCTCGTAGCTGAC 378857 29 100.0 37 ............................. TACCAAGCAAAGTGTCAGGTTCACCAGCCTGAACACT 378791 29 100.0 36 ............................. CTGTTCACCTCCTTTCGACGCTTCAATCATATTCAA 378726 29 100.0 36 ............................. CATTCCAATAGATGGCGCTACTTGCTGCTGTATTAA 378661 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 54 29 100.0 37 GTTTACATCCCTCATAGTTCAGATAAGAC # Left flank : TCGCAAGCTCTTAAATATGCTTGACCTAAAAAAGGTAACATTAAACCAAATTGTATCAGCCTATGCTTAAGATGGTTTGCTTTAAGATGCCCAAGTTCATGTGCAAGTATGAACTTTACTTCATCAAGACCTTCCTTATATGCAAGCTCCAGAATACCAGAATAAATAACTACAAAATCTCTTCCAATAAACCGCATAGCAAAGGCATTCAAAAGTCTACCTGACTCAATTACATATATTTCAGGTACCTTTTCAAATCCCATCTGCTTTGCTAATTGTTTATATGCTTCATAAACTTCACTAAACTGCTTGTTAGAGAGTTTTATACCATTGCCCTTGATTCCTTCAATCAAAAGTTCCTTTGCAAAAAGTATAAAAATTCCTATATACCTAAATTTTTTATTCTATACTATTACATAAGGCTTCACATTAAGTAGCAGGTGGGGAATTTTTAGTGTCATTTCTGATGATTTTATTTTATCATTAACAGTTAGTACAAG # Right flank : CCACACTTATCAACGCTCTCACAACTTAGGCGTCATCAATATTATACCTTATCATGCATCGCTTTGCAATCGATATTATTTGCAGCAAAGGTGAAATTGGTTGTTGGTATTAAATGTTAAATGAGTTTCTTTTGCAGAAATGATATGAGGTTTGCCTGCCAGGAAGATTTTTTAGGTTCGCTGCAAATTGGTTATTTTTTACAATGCTATAGTATCACAGAATCGTAGTTCTTCTCCTGCCCAAGTATTTTCTTGTTGCATACAATTTTGTACTCCATTTCATAAAAATACACCGAATCCTCGTCTTTCTCTATCACAGAAAAAAGTTCTCGTTTGCATTTTTCAAGTTTTCCATATGTTATTTCGCCCTCAAATACAGAGTTTTGTACCCATGTGAAATATTTTTTCAAAATCTTTCGAACTTTATTTACCCGCTTTTCATTTACGTCATATGTCACTATTACAAAAATTTTTCTCACTCCCCTGTCATAGCTCTAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCTCATAGTTCAGATAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //