Array 1 8662-10826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPZA010000015.1 Escherichia coli strain 23EC NODE_15_length_106242_cov_58.902888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8662 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 8723 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 8784 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 8845 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 8906 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 8967 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 9028 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 9089 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 9150 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 9212 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 9273 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 9334 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 9395 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 9456 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 9517 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 9578 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 9639 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 9700 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 9761 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 9822 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 9883 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 9944 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 10005 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 10066 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 10127 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 10188 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 10249 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 10310 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 10371 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 10432 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 10493 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 10554 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 10615 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 10676 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 10737 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 10798 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGAACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17466-16949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPZA010000028.1 Escherichia coli strain 23EC NODE_28_length_60729_cov_57.914475, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17465 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 17404 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 17343 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 17282 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 17221 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 17160 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17099 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 17038 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16977 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //