Array 1 8060-3004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHV010000022.1 Clostridium perfringens strain 1805-138 NODE_22_length_47779_cov_94.2219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8059 29 100.0 36 ............................. TAAATGTTAGAGAAACTCCTAACGGAGAGGTTATAG 7994 29 100.0 36 ............................. GGTTAGTTAATGCATAAGCTATTTCCGTAAACTTAT 7929 29 100.0 36 ............................. TATTTATATTTCTATTTTATCATACTTTATCCTACT 7864 29 100.0 36 ............................. TTTCTTTAAACTCAACTTCTGTAATAAGAGAATCTT 7799 29 100.0 37 ............................. TGGGGAGATGTAGGTTCAATTGATAAGCCTGTCGATA 7733 29 100.0 36 ............................. GTAATAATAACTTCTCTTTCAAAATTTAACATAATA 7668 29 100.0 36 ............................. GATGAAACTTGGTATTACAGAGCAAGAGCTGTTAAT 7603 29 100.0 35 ............................. ACGGAGAGTTTGATGTTTATAGTAGCTCAGAAAAG 7539 29 100.0 37 ............................. ATGATAATAAGTATAGTATTTATATTAGTAGTAGTAG 7473 29 100.0 36 ............................. AACAAAACATAAAAACATTACAACGCCTGTTATAGG 7408 29 100.0 36 ............................. TCTAAGATAGTATTAGTTAAATTTAAGAAAAGTGCA 7343 29 100.0 37 ............................. GTTAAATATACAGAAGGTGGGTATAGAATATATAAAA 7277 29 100.0 38 ............................. ACTAAAAAACTCAAAAACAAAAACAAAGGTTTAAACAT 7210 29 100.0 36 ............................. AGAGAGGGTTATTTTGTAGATACTTTTAATAATTTT 7145 29 100.0 36 ............................. ACTTTATTAGATTAGATGATTCAAATGGAGATTATC 7080 29 100.0 36 ............................. GCTTATATGATAATAATGTAAATAAGATTGATTCTC 7015 29 100.0 36 ............................. TCATATTTAGAATAGTTAATCGTGTCGTTTTTAATA 6950 29 100.0 36 ............................. CATTTATATAAACTAGAATGTGAAGATGATTCAGCG 6885 29 100.0 37 ............................. GTTGAAAGTACTTTAAGCATTACTTGTACCACTCTTC 6819 29 100.0 36 ............................. TAGAACCTTTACCGCCTAGCACTTCAACACCTTTCA 6754 29 100.0 36 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGTA 6689 29 100.0 37 ............................. TAATATTCCACTCCTTACTTAATAAACTCCGAGGACG 6623 29 100.0 36 ............................. GGAGAATTAGTCCAAGGAGTTTTTAATGCAGATATT 6558 29 100.0 35 ............................. AACTTTGTAGAATCGTAAAGCTTATCTTCAACTTG 6494 29 100.0 36 ............................. GTTATTATCATCATTATCCCCGAAAGCTTAGTTTTC 6429 29 100.0 36 ............................. TTTACAGTATCAGTTACAGTTACCCAACTGTCTTTG 6364 29 100.0 37 ............................. AGGGAAAACTGATGCAATAGGTAATTATAAATTTATA 6298 29 100.0 36 ............................. CTTAATGATAAACCTAAAAAGAAAAAAATACGCAAT 6233 29 100.0 36 ............................. AACTTTATTAAAATAATAGCTGCATATAATATCTTT 6168 29 100.0 36 ............................. GTGAAAACAGTAGGTAAAAATTTATTAGATCCATCA 6103 29 100.0 36 ............................. TGAGATTTTTTAAATCTATAGTGCTATTCGGAGTGT 6038 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 5973 29 100.0 36 ............................. ACTTTATTAGATTAGATGATTCAAATGGAGATTATC 5908 29 100.0 36 ............................. GCTTATATGATAATAATGTAAATAAGATTGATTCTC 5843 29 100.0 36 ............................. TCATATTTAGAATAGTTAATCGTGTCGTTTTTAATA 5778 29 100.0 37 ............................. TTTAATTCTGAATCTTTCTCCAGCTGGTATTTTTCCA 5712 29 100.0 36 ............................. TGTTTAACTATTTATTTTCAGTTGTTGGTACAAAAT 5647 29 100.0 37 ............................. AAAGAACTTGAAAAAGAGCTTGACGAATTTCATGAAG 5581 29 100.0 36 ............................. TTATGTTCTGAAATTATATTAGTAATTGGTAATTCA 5516 29 100.0 37 ............................. TTATGGTATGCATGGTATAACTCTAAACTTAATAGAG 5450 29 100.0 37 ............................. AAGTTTTCAGGATAAACATAGAAACATTGTGAAGTTG 5384 29 100.0 36 ............................. CCATAAACCCTTTGTTTTTTAAAATATCTCTTACAC 5319 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 5254 29 100.0 38 ............................. GTTGAATAATTGAACCATGTTTCTCTCTATCTTTATAG 5187 29 100.0 36 ............................. GTAGCTCCAGAAACTTTAGCTGAAAAAGCATTAACA 5122 29 100.0 38 ............................. GGAGTTAACTCATAATCTAAAGTATTATCTCCAGGAAT 5055 29 100.0 36 ............................. AAATCAACCATATTGGTTCCATACAGAATTTCAAGA 4990 29 100.0 36 ............................. ATATCAGAAAATAGATTAACAAGGGGACTTAACTGA 4925 29 100.0 36 ............................. CTCTATTTTTACGCTTATTAAATTCAACAATATTTC 4860 29 100.0 37 ............................. AAGTTTTAAACTCATCTATAAAAAAATTATCGCTAGG 4794 29 100.0 36 ............................. GCGTTTTTGCATGGGATGAAGTTCAAAACGAATTTA 4729 29 100.0 37 ............................. TAAACTTAAATAAATATAATCCATAGTAACCTTAGCA 4663 29 100.0 36 ............................. TAAATATTAAACTATTCTTACAGATGACTTACTACA 4598 29 100.0 36 ............................. GAGTATATCAAGCTGTAGAACACAAACATGCTACAT 4533 29 100.0 37 ............................. ATGGGTAAAAGTGTTGTAAGATTGCTAGTAACAGCAG 4467 29 100.0 36 ............................. GATGTTAATAAGCGTATTAAAATAAAACCACGTAAA 4402 29 100.0 36 ............................. GTTGAGAAAGTGCAAGGTGTTAATAGGAAGGTTAAA 4337 29 100.0 36 ............................. TGTCGTTTTCGGTGGATTAACTCTTTTATTTTTAGC 4272 29 100.0 36 ............................. GAAGTTACATGAGCATTATTTATAATTGTAGTCTCA 4207 29 100.0 37 ............................. CCCAAATGGAATATCAACAGGATTACCAATATTAATA 4141 29 100.0 36 ............................. TTATTACTTGTTTAACGAGGTGTACACCTTAATTTT 4076 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 4011 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 3946 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 3881 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 3816 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 3751 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 3685 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 3620 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 3555 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 3490 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 3425 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 3361 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 3296 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 3231 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 3165 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 3099 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 3033 29 86.2 0 .................GAA....C.... | C [3006] ========== ====== ====== ====== ============================= ====================================== ================== 78 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTTCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //