Array 1 36103-32290 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLW01000002.1 Salmonella enterica subsp. enterica serovar Ealing strain NCTC 11948 NODE_2_length_384781_cov_20.8847_ID_4646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36102 29 100.0 32 ............................. TGCTTCAGGCTGGCTTAATCATTACGGCTTGA 36041 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 35980 29 100.0 32 ............................. CCGCCCCGGAAATGCCAGCCAACGCCGATTTA 35919 29 100.0 32 ............................. GACGAGCCGGAACAGCCGCCGGGCCGGGCGGC 35858 29 100.0 32 ............................. GTTATTTTCTGAGGTCGCGAATCAACGAAACT 35797 29 100.0 32 ............................. AAATACATACTGCTAACCCACAATTCAAAAAG 35736 29 100.0 32 ............................. TCACGTAATCCGGGTGCGCCGCCAGCCTCTCG 35675 29 100.0 32 ............................. GGGGGTGATAACCGCCTCGCTGAACGCTACGC 35614 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 35553 29 100.0 32 ............................. CGCGGCCACATCCCGATCAATGTCGGGAGGGC 35492 29 100.0 32 ............................. AATTGCCGCTCGTTATTAAAGGAAATTAATTT 35431 29 100.0 32 ............................. GCAACTCATCACGATCACTTACAGGTTGGCTA 35370 29 100.0 32 ............................. GTATCGATCAACACTAATTCGCCAGTGTTCAG 35309 29 100.0 32 ............................. TATGTCGACACGCCGATCCCGCATTTCACCCA 35248 29 100.0 32 ............................. TTTATCAACGGCATGGAAATGCCTTTGATTAC 35187 29 100.0 32 ............................. ATTGTTCAACGGCTGGCGGCGGCTGACGCTGC 35126 29 100.0 32 ............................. TTTAGCGATCTGATCTCCGCAGGCGAATGCAG 35065 29 100.0 32 ............................. GAACACCAGTGACAAACGTGTTGCAATAAGTT 35004 29 100.0 32 ............................. TATCCATCTCACAATGGGAGAGGGATGACAGC 34943 29 100.0 32 ............................. ACATCAAGGCCGCAGTGCGTAAACGCGGGGTG 34882 29 100.0 32 ............................. TCGCTACGGGTCGGCAGGGTCTCAATTCGAAC 34821 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 34760 29 100.0 32 ............................. CAGACCTGGCAGAAGCACAAGCCGCTGATGCT 34699 29 100.0 32 ............................. GGTTGGCCTTTACCATGCCCCTTTCATAACCC 34638 29 100.0 32 ............................. CTGAGTCAAGTGCGCGAGTCCAGGCTGAGAAA 34577 29 100.0 32 ............................. CATACGTGCGTAAGGGGTTATCGCCTCAGTAA 34516 29 100.0 32 ............................. CACGCCGCACGCGCTGGCATAGCGCAGCAGTG 34455 29 100.0 32 ............................. ACAAAATTGAGGATTTCGGCGTAAATGCTGTG 34394 29 100.0 32 ............................. AAATAAATGCCGTTATCGAAGAGGAAAAGAAA 34333 29 100.0 32 ............................. CTGGCGGAGCTGATGGGCGATGCGGGCGCATT 34272 29 100.0 32 ............................. CCAAACTGGTCAAGCTGGCGATTATCAAAAAA 34211 29 100.0 32 ............................. TGACGCTTTTTATTGATTCATTTTGCGATACG 34150 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 34089 29 100.0 32 ............................. CCAACATTAGGGATTGAAAAGGCAGAATTTAG 34028 29 100.0 32 ............................. ACACAGCCCCTAAATCAGCGCAGCCCGCGCCG 33967 29 100.0 32 ............................. CCGTGATAGTTATGAATTCCTCCGGTCGCTAC 33906 29 100.0 32 ............................. CAACGAAAAGTCGTTAAGCGTCTCATCTCCCT 33845 29 100.0 32 ............................. GTAAGCGACTGAGTATACACAGTCCGGGCACA 33784 29 100.0 32 ............................. GCAAAAATTGCAGGAATCTACGCCAACGGATT 33723 29 100.0 32 ............................. ATGATCGCTCCGTTCGCGTCGAACACCCGGAG 33662 29 100.0 33 ............................. CAAACAGTAAACGGTTTGTTTTGCAGGCCCTGA 33600 29 100.0 32 ............................. GCGAGTTCTCGCTGAATTGTGGCGGCACACTG 33539 29 100.0 32 ............................. GCGAGTTCTCGCTGAATTGTGGCGGCACACTG 33478 29 100.0 32 ............................. GAGTTATCTCGTCGGGTCGTTGCAAATATCGT 33417 29 100.0 32 ............................. GAACTGTTTGACGACGCGCAGGACGACAGTAT 33356 29 100.0 32 ............................. GACAGGCCGGGATCGGTGGGGTTATCGACGAG 33295 29 100.0 32 ............................. ACCTGGTCCGTAATAACGGCGTGGCATCAAAT 33234 29 100.0 32 ............................. GCAATTTTGCGGCGAACGTGCTCGCTCTCATC 33173 29 100.0 32 ............................. TTATCACCCACCAAATTAGAGACAGAAATACT 33112 29 100.0 32 ............................. AGCAACATCGACAAACGAGCGCTGAACCAGGC 33051 29 100.0 32 ............................. TCATTACCAGAATTACCAGGGCAGGAACAGCA 32990 29 100.0 32 ............................. TCTCCAGAAACGTTCGCCGAAACGTTCCCGGA 32929 29 100.0 32 ............................. CAAATTAAAGTAGCTGGATTGTGGTTTTGGTT 32868 29 100.0 32 ............................. GGTTATCTCGGCTATCGCTTGCCGCATGACGG 32807 29 96.6 32 ............T................ CCTGCGGCTGGAAAGACAAACTCCGGGATGCC 32746 29 100.0 32 ............................. CGGATAGACCGCGCCACGCTGGTGGCTAAGCG 32685 29 100.0 32 ............................. ACTCCCCAATTTGTTTCTCCAGACTGATCTTC 32624 29 100.0 32 ............................. TGATTTTCGGTAATTTTGCCGATCTGATTGTG 32563 29 100.0 32 ............................. GGCCTCGTCCGGCGGATCGCTGTTTCGGACCC 32502 29 100.0 32 ............................. CGTATACGTTTCTCAACAAGAAGGCGCGTAAG 32441 29 100.0 32 ............................. GAAAACACCATTGCAGCACTCCCCAGCCAGAA 32380 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 32319 29 96.6 0 ............T................ | A [32292] ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAACCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGTGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54604-52378 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLW01000002.1 Salmonella enterica subsp. enterica serovar Ealing strain NCTC 11948 NODE_2_length_384781_cov_20.8847_ID_4646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54603 29 100.0 33 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAAC 54541 29 100.0 32 ............................. CAGACGATCAACTAACAGCCCGTCAACCGTTC 54480 29 100.0 32 ............................. CCATCGAGATCCGCTGGCTTTAAATTATACTT 54419 29 100.0 32 ............................. TGTTTGCCTCGCCCGCTGCCGCCGTCCAGATA 54358 29 100.0 32 ............................. CACCCCCATTTCTTCATCGCCGATACCGTCCT 54297 29 100.0 32 ............................. CTGCTCAAATAGTATTTTTCGGGGATCGGCCC 54236 29 100.0 32 ............................. GTTGCCAGGCGTTTTTGCATGTCGTCGCGTTG 54175 29 100.0 32 ............................. GTTGCCAGGCGTTTTTGCATGTCGTCGCGTTG 54114 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 54053 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 53992 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 53931 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 53870 29 100.0 32 ............................. CCGCCTCCTTCGTGGCAATACCACGGGCGATA 53809 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 53748 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 53687 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 53626 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 53565 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 53504 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 53443 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 53382 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 53321 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 53260 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 53199 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 53137 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 53076 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 53015 29 100.0 32 ............................. TCTTCTTTTTTGTCTTTATTGCTCATGATTGA 52954 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 52893 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 52832 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 52771 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 52710 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 52649 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 52588 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 52527 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 52466 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 52405 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //