Array 1 11302-10052 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMKP01000020.1 Escherichia coli strain MOD1-EC6823 MOD1-EC6823_20_length_80941_cov_28.275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11301 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 11240 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 11179 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 11118 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 11057 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 10996 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 10935 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 10874 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 10813 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 10752 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 10691 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 10629 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 10568 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 10507 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 10446 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 10385 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 10324 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 10263 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 10202 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 10141 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 10080 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37584-37005 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMKP01000020.1 Escherichia coli strain MOD1-EC6823 MOD1-EC6823_20_length_80941_cov_28.275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37583 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 37521 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 37460 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 37399 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 37338 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 37277 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 37216 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 37155 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 37094 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 37033 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATAAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //