Array 1 18035-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYM01000037.1 Neisseria meningitidis strain NM1831, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18034 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17968 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17902 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17836 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17770 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17704 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17639 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17573 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17507 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17441 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17375 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17309 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17243 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17177 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17111 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17045 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 16980 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 16914 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16848 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16782 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //