Array 1 36044-39015 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQNQ01000003.1 Clostridium perfringens strain SC4-C17 NODE_3_length_259592_cov_92.9585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 36044 29 100.0 36 ............................. TATTCTTTTGTATAACAAAGCTTGTCATCCAACGTT 36109 29 100.0 36 ............................. ATTTAAAACCCTTCTATTCTTTAAGTTATTTAAACA 36174 29 100.0 36 ............................. TCGACAAGGCTTTAATGGGTAGTGAGATATATAACA 36239 29 100.0 36 ............................. TTTAGAATTACAGATGCTTAGGAAGAAAAGAGAAGA 36304 29 100.0 36 ............................. AGCAAGTAATGTAGCAGCAACTTTTGGAGAAAAGAG 36369 29 100.0 36 ............................. CGAGTTTCTACACCTGCATATTCTACATAATTACCT 36434 29 100.0 37 ............................. GTATACTTAGATTCTATGAGCGAGGAAGATTTAAATA 36500 29 100.0 36 ............................. TAATCAAGTTTGGCGACAAGTGAATCAGAAATCAAA 36565 29 100.0 36 ............................. TAGTTTTACCATAACCAGGTAAACCAAAAAAACCAA 36630 29 100.0 36 ............................. TATAAATACTAGGATATATTTTCGCCTTTTCTTCCT 36695 29 100.0 37 ............................. TTAATGCCACTCTCCTAATTATAATTTATTTAAATTA 36761 29 100.0 37 ............................. TATCTAAGATTGTAGCTGCGTATTTAATGCCATACTG 36827 29 100.0 36 ............................. TATCATATAAAAAGTGTAAGTGTGTATGGTTTGCAT 36892 29 100.0 37 ............................. AATAAGCTTAATGGGGGGCATAATCTTCTCATTTCTC 36958 29 100.0 37 ............................. ACAGGAGGAGATAAAGTACCAGTCTGAGTATTACCAA 37024 29 100.0 36 ............................. CGAATAAAAAATAAAATATTTTTTAGATTAAACCAA 37089 29 100.0 37 ............................. AAAATTGTAAAAGATGTTCCAAAAGTCATATAAACAA 37155 29 100.0 36 ............................. TCGTTACCCAAGATAGTAAAAACAAAATACTTCTTA 37220 29 100.0 36 ............................. TATGCAGATACAAAAGTTTCAGTAACACATTGTATC 37285 29 100.0 36 ............................. TGAGGAAAGTTCAGAACTTATTGAAGATGACCAAAT 37350 29 100.0 36 ............................. ATTCATTTATATGGTATTTACGGTTATTTGGGTTTA 37415 29 100.0 36 ............................. TATACATCAGAAGGATTTAAAACGTATGCAGATAAG 37480 29 100.0 35 ............................. GTAGTGGTAGACATAGAGCAGTTACTGGCAGTTTT 37544 29 100.0 37 ............................. TTATATTATTTTCTCTTTCATCATCTCATATAATCCA 37610 29 100.0 37 ............................. AATTAATAGGTGTCTTTTATTGAGATTATTTTTAGAA 37676 29 100.0 37 ............................. GAAGAAATGAATGGTCAATTACACTTTTTAACAACTT 37742 29 100.0 37 ............................. TAACCACGATACTGAGCAAAACTAGGAAAAGTATAAG 37808 29 100.0 36 ............................. TTTCTAACGTATTTATACAATTTATTGCATATCCTT 37873 29 100.0 37 ............................. GTAGCAGTAGCTATCTTAATACATCTATGAGGTATTA 37939 29 100.0 37 ............................. AAGCTTTAAACTCATCTATAAAAAAATTATCGCTAGG 38005 29 100.0 36 ............................. AACTTGATTATGGCGACAATTTAGAGACACATGTTA 38070 29 100.0 37 ............................. CATTGGAATAGGTATAATGGGTACTATGATTGGGGTA 38136 29 100.0 36 ............................. GTTGGATTCGATGGCATTTCCGTTACAGGGACAACG 38201 29 100.0 36 ............................. GACTTTATGGGATATAGCAAAAAGTATATTAAGCTT 38266 29 100.0 36 ............................. AGAAATAATATAGCTTTAAGTGGAAGTTTTTATAAT 38331 29 100.0 36 ............................. TGGACAGATTCTAACTTAATAGATAAATATAGTCAT 38396 29 100.0 38 ............................. TTAATATAGTTGGTAAATTAGTAGCTATAGCCTGAATT 38463 29 96.6 36 A............................ AATGTAATTAAAGGGATAAAAGAAGGACAAACTATT 38528 29 100.0 37 ............................. ACAACAATATTAGTAGTTATATTATTTGCTTTAGAGC 38594 29 100.0 36 ............................. CAAATATATTTATAGGTTTATCATGGATTTCTATAA 38659 29 100.0 36 ............................. TGATGTACATATGGAGCATATTCAGCTGTACAGCCT 38724 29 100.0 36 ............................. GAATTAAATAAATATGAAATAGCATAATATAGAAAG 38789 29 100.0 36 ............................. GTAAAATGATCCTTAACGGAACAAGGCACTTTTTCT 38854 29 96.6 37 ............A................ AAAAAAATGGAAATTATTTAGGGTGAAAAATAGCTAA 38920 29 100.0 37 ............................. AAAGAAGCTGTATATAAAGTTTTACATGGTGCTGACA 38986 29 86.2 0 .................GAA....C.... | T [39013] ========== ====== ====== ====== ============================= ====================================== ================== 46 29 99.6 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATATTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATATATTTAGCAGTTTACATCTAATATCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //