Array 1 1848575-1850252 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKR01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03416 2014LSAL03416_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1848575 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1848636 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1848697 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1848758 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1848819 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1848880 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1848941 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1849002 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1849063 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1849124 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1849185 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1849246 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1849307 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1849369 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1849430 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1849491 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1849552 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1849613 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1849675 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1849736 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1849797 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1849859 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1849920 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1849981 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1850042 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1850103 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1850164 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1850225 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1866511-1868492 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKR01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03416 2014LSAL03416_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1866511 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1866572 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1866633 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1866694 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1866755 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1866816 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1866877 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1866938 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1866999 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1867060 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1867121 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1867182 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1867243 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1867304 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1867365 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1867426 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1867487 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1867548 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1867609 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1867670 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1867731 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1867792 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1867853 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1867914 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1867975 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1868036 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1868097 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1868158 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1868219 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1868280 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1868341 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1868402 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1868463 29 96.6 0 A............................ | A [1868489] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //