Array 1 461351-462903 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYB01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain M-6699 NODE_2_length_726122_cov_129.522855, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461351 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461412 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461473 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461534 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461595 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461656 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461717 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461778 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461839 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461900 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461961 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 462022 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 462083 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 462144 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 462205 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462266 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462327 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462388 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462449 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462510 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462571 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462632 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462693 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462754 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462815 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462876 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479218-479735 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYB01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain M-6699 NODE_2_length_726122_cov_129.522855, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479218 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479279 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479340 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479401 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479462 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479523 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479584 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479645 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479706 29 93.1 0 ............TC............... | A [479733] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //