Array 1 463326-464026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLB010000005.1 Listeria innocua strain ATCC 33091 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 463326 36 100.0 30 .................................... TTTTATCTCGTACATCTGAAATAACCACAA 463392 36 100.0 33 .................................... TTTAATTCCGCTAGGAGCAACCCAGGATNNNNN 463461 36 86.1 30 NNNNN............................... AGGAATAATTACAAAGACAGTTCGAGATGA 463527 36 100.0 30 .................................... ATTAGTTTTTACCGTTGTATTTGTATCATC 463593 36 100.0 30 .................................... TGAATTTTATCTGCTGTATTTACTCTACAC 463659 36 100.0 30 .................................... CTTGAAAATGTTGTAGATTTGAATGGTTCT 463725 36 100.0 34 .................................... CACCTGATGCCAAAAAGAAGACCCTCCTCNNNNN 463795 36 86.1 30 NNNNN............................... ACATCTGACATTTTTGCCTGTAGAGGACTA 463861 36 100.0 30 .................................... GACCGTAGAATTCCGAATGGTGCGAGAGCG 463927 36 97.2 30 ..........................G......... AGAGAGGATGAACTCTAAATAATCGGAAAT 463993 34 83.3 0 ..............C.....C....A.-..-...C. | ========== ====== ====== ====== ==================================== ================================== ================== 11 36 95.7 31 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAAAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTAAACCATTATGAAAGAGAGGTCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTGAAAACTACGACACACGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NNNNNAGAGCTATGTTATTTTGAATGCTAACAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 292397-292946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLB010000015.1 Listeria innocua strain ATCC 33091 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 292397 29 96.6 36 ..............T.............. GGCACTAAGCTATCTTGGTATGATAACCGGAAGGGC 292462 29 93.1 38 ..............T.A............ TTGGATTATCAGCATTTTATTAATCATTTGGGTAAAGA 292529 29 100.0 36 ............................. TGACAAAGTATCCGTGCACCAATTCCCCGTTATCTA 292594 29 93.1 37 ..............T.A............ ACAAGACGCATACAACTTTAGAGGTGAGCGAAATCGA 292660 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATTCTCCTG 292723 29 100.0 36 ............................. TGGCATTATTTTATCTAGTGAACCGGAATCTAAAGT 292788 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 292853 29 96.6 36 ..............T.............. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 292918 29 72.4 0 A.....AG......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 94.6 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCGGACTCCATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATTGGACGAATCTTAGGTCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGGAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAATATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTTCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 308564-309698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLB010000015.1 Listeria innocua strain ATCC 33091 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 308564 29 100.0 38 ............................. GACCAATCCTGATGTTTTTTAATCGTATCTTTCGTAGC 308631 29 100.0 38 ............................. ACATGTTAGTGATATATGTGTAAGTATGAAAGCTGAGG 308698 29 100.0 35 ............................. GTCGAAGATGGAATGGAAATAGACGAACTTGCGGG 308762 29 100.0 36 ............................. TACACACAAATATCTTTTTGACTCATCTTTGTTGCC 308827 29 100.0 35 ............................. GCTATTTTGATTGAAGTAGCGTTTATTAGTAATGC 308891 29 100.0 36 ............................. ATATTTATTGTGTTCGTAAACAAGTATTGCTGTCCC 308956 29 100.0 34 ............................. TTGACATCCGATAAATCAAAGTTCAGTGCTTTTC 309019 29 100.0 37 ............................. GTACCTCTAAAATGGGGAAATGTTCTTGTATCTCATC 309085 29 100.0 35 ............................. TATGAATGAAATAAGAACTGTATGTTTTGTCTACG 309149 29 100.0 39 ............................. GTTTCATATTTTAAATATGTGGATGCATTCTNNNNNNNN 309217 29 93.1 37 NN........................... CGGAAGATTCATCTGCTAATACGCCTAGATTGTCTGC 309283 29 100.0 34 ............................. AAAACCTTGTATAAACCGTAAGCAGCTAAACCGA 309346 29 100.0 36 ............................. TCTTCAGCAAAATGTTGAATGTCAAACTTGCGCTGT 309411 29 96.6 35 ..................T.......... GTTCTAAGTTTAGAAATATCCCACGTGTACGTTTG 309475 29 100.0 35 ............................. GTGAAAATAAAATCTAGACATTCTAAAGCGCTTTT 309539 29 100.0 36 ............................. TAATGATCATTGCAACCGTGAATATCAGTGCAACAT 309604 29 100.0 37 ............................. ATAACCCTTTTACTATTGCTTTTAATAAATCCCATCC 309670 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ======================================= ================== 18 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTTCGGTGTAGTAATTAATTCTCTGTAGTTACTANNNNNNNNNNCGTTTTAACTACTTATTATGAAATGTAAATTTCAGAGACATTTCTTAAAGCTTTTGAAAGAACTTCCATTTTAACTACTTATTATGAAATGTAAATAAACTTTGAGTTAACAACCCATTACGCCCAACAAGTTTTAACTACTTATTATGAAATGTAAATGAAATACCTTCGATAAAGTCGCATTCGTATACATTGTTTTAACTACTTATTATGAAATGTAAATTTTCCTTCTTCTGTTGAATACAAATGGCATTTATCGTTTTAACTACTTATTATGAAATGTAAATGCAGTAGCAGTAATAAATGAGCTATGATGCTTGTTGTTTTAACTACTTATTATGGAATGTAAATAATAAAAATACTGATTTCTTGCATTGTAACGTCAGCGTTTTAACTACTTATTATGAAATGTAAATCAAAGTCAGGCAAGCGACGTAATACTTTTGCTTTTGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 309809-310221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLB010000015.1 Listeria innocua strain ATCC 33091 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 309809 29 96.6 34 A............................ AAACTTTGAGTTAACAACCCATTACGCCCAACAA 309872 29 100.0 35 ............................. GAAATACCTTCGATAAAGTCGCATTCGTATACATT 309936 29 100.0 35 ............................. TTTCCTTCTTCTGTTGAATACAAATGGCATTTATC 310000 29 100.0 35 ............................. GCAGTAGCAGTAATAAATGAGCTATGATGCTTGTT 310064 29 96.6 36 ...................G......... AATAAAAATACTGATTTCTTGCATTGTAACGTCAGC 310129 29 100.0 35 ............................. CAAAGTCAGGCAAGCGACGTAATACTTTTGCTTTT 310193 29 93.1 0 ........C..........C......... | ========== ====== ====== ====== ============================= ==================================== ================== 7 29 98.0 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : AATAAAACCTTGTATAAACCGTAAGCAGCTAAACCGAGTTTTAACTACTTATTATGAAATGTAAATTCTTCAGCAAAATGTTGAATGTCAAACTTGCGCTGTGTTTTAACTACTTATTATTAAATGTAAATGTTCTAAGTTTAGAAATATCCCACGTGTACGTTTGGTTTTAACTACTTATTATGAAATGTAAATGTGAAAATAAAATCTAGACATTCTAAAGCGCTTTTGTTTTAACTACTTATTATGAAATGTAAATTAATGATCATTGCAACCGTGAATATCAGTGCAACATGTTTTAACTACTTATTATGAAATGTAAATATAACCCTTTTACTATTGCTTTTAATAAATCCCATCCGTTTTAACTACTTATTATGAAATATAAATTTCGGTGTAGTAATTAATTCTCTGTAGTTACTANNNNNNNNNNCGTTTTAACTACTTATTATGAAATGTAAATTTCAGAGACATTTCTTAAAGCTTTTGAAAGAACTTCC # Right flank : TACTGGTTACAACATCGATAAAACGATTTATCCAGNNNNNNNNNNTTTAACTACTTATTATGAAATGTAAATCTGAATCAGCAACTGGAACAGTATCTAAAACATTTGGTTTTAACTACTTATTATGAAATCATAAACTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTTCTACATTCTTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTTGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTGGCTGCGAGGTTGGTATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //