Array 1 34-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZY01000222.1 Xanthomonas fragariae strain PD 6882 isolate PD 6882, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 94 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 154 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 213 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2182-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZY01000220.1 Xanthomonas fragariae strain PD 6882 isolate PD 6882, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2181 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 2121 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 2060 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 2000 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 1940 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 1880 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 1820 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 1760 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 1700 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 1640 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 1580 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 1520 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 1460 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 1400 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 1340 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 1280 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 1220 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 1160 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 1100 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 1040 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 980 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 920 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 860 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 800 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 740 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 680 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 620 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 560 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 500 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 440 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 380 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 320 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 260 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 200 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 140 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 80 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //