Array 1 103770-106975 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCG01000095.1 Streptococcus anginosus strain KHUD_S1 NODE_2_length_196586_cov_655.254100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 103770 36 100.0 30 .................................... TTATAAGCGTTACGCTAATTTTTAGCAACA 103836 36 100.0 30 .................................... AAGAAGCGGTTGAATCAATTGAACGTGTGA 103902 36 100.0 30 .................................... CTATTCTTGTAGTGCTTTCATCGACTTCGA 103968 36 100.0 30 .................................... CACCCCCTACCATTGATTTACCAAGGTTAT 104034 36 100.0 30 .................................... CTCTCTTTTGTTTTTCTCAAAACCAATTTT 104100 36 100.0 30 .................................... CTCTGTCCAATATGAAATATGCTAGCTCCT 104166 36 100.0 30 .................................... CTCACATTTTGGGTAAAAATGGGGTGTTTT 104232 36 100.0 30 .................................... ACTATTTTCTGTGCTTTGATTAGTAATTGT 104298 36 100.0 30 .................................... TACCTATTTAACATCAATACTCGAAAATCT 104364 36 100.0 30 .................................... GAACTACGTATATCACACAATCCTGCTGAT 104430 36 100.0 30 .................................... TTTAGGTTTTAAAGAATTGTATAAGTAAGG 104496 36 100.0 30 .................................... ATTGAATTCCATGCTCGGGTTAAATGCTTT 104562 36 100.0 30 .................................... AAATTCAAATAGTACCGAAAACGACTTAGC 104628 36 100.0 30 .................................... CTTATTCAATTACTTCAATAATTTTTATAA 104694 36 100.0 31 .................................... CAAATCATATCATTTCGTTTGATGATTTAGG 104761 36 100.0 30 .................................... CAATGAAATTAGAGTTATTCCTATTGGATA 104827 36 100.0 30 .................................... TAATGGAAATTAACGAAAAAATGATAGAAG 104893 36 100.0 30 .................................... GAATAGTTCCTGGAACATCTTCCACAGCAG 104959 36 100.0 30 .................................... TTTAACGTTGGTGCATACGTAGGTGGGGTA 105025 36 100.0 30 .................................... AATTGATGTTGAAACGCAACTATCCTAATA 105091 36 100.0 30 .................................... ACTATTTTCTGTGCTTTGATTAGTAACTGT 105157 36 100.0 30 .................................... ATCTCCGCTAGACTTTATTAAATACAGACA 105223 36 100.0 30 .................................... TTGCGGTGATATTATAATTACAGATGTAAA 105289 36 100.0 29 .................................... CTTTCTTTGCTACACTGTAACTGAGGCAG 105354 36 100.0 30 .................................... ATCAAGTCTTTTCATCTTTCTCCTTTCCTA 105420 36 100.0 30 .................................... GAATTCTTGATGAGCAAGCATTTGCTCGTG 105486 36 100.0 30 .................................... CAAGTCTATTGTCGTTCCGAAAGGTGATAA 105552 36 100.0 31 .................................... TGGCTCATGTGTCACCTTTCCTCCAAAAGCA 105619 36 100.0 30 .................................... GTCAGACCACATATTATCGCTTGAGAAGAC 105685 36 100.0 30 .................................... AGTTTCACCAGCGACATTTACTCCTTTATA 105751 36 100.0 30 .................................... TCTAAAAGATTTGTCAAAAAAATATGAATA 105817 36 100.0 30 .................................... GTCAATGACTTTTAAATATGGCGGTTTAAG 105883 36 100.0 30 .................................... CGAAGAAACAGATGACTCTGCGTATTTCGA 105949 36 100.0 30 .................................... ACCAGAAGCCGTTAAAGTTTCATTATGTTT 106015 36 100.0 30 .................................... TTATGCACCAAAACAAAGCGTCCAGTTTGA 106081 36 100.0 30 .................................... CTGATACAGCGTGACTATGAGATACAAAAT 106147 36 100.0 30 .................................... CGAGCTCAAGGCATTACTTACGCTGTAATT 106213 36 100.0 30 .................................... CAGCAACTGGTCCATATAATAATGTGGTTA 106279 36 100.0 30 .................................... AACGCAAGCAAAACAGGCAGGGTTTGGAAA 106345 36 100.0 30 .................................... CGTAGCACATTCGTAAAACTGCCCTTTCAA 106411 36 100.0 30 .................................... ATGACAGTTGCCCAGCAACATCAGTATACG 106477 36 100.0 30 .................................... AGAGCTGGATTGAACTCAATTGGTACGATA 106543 36 100.0 31 .................................... AATTGGGGAAAGCTGGCTCTTTGGATGTTAA 106610 36 100.0 30 .................................... TGACATCACTACCGACCCAACCTTACTAAC 106676 36 100.0 30 .................................... CAGCAAGTGTTATTGCTATGGCTGGGAATA 106742 36 100.0 30 .................................... TACGAGGGAACGAGCGGATATGACAACGTT 106808 36 100.0 30 .................................... CGTGGTCACTACATCAGCTAGTGTCAATAA 106874 36 100.0 30 .................................... TAGAACAGGTCCTTATAATAATGTGGCTAT 106940 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 49 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTGTTTTTATGCAAACATGAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGTCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTACAGCGGGAAGTCAACAATTGCTTTCCTTCTTGCTCGGAAGTACGATCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGTTGAGACATCCAAAGGAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20673-21216 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCG01000074.1 Streptococcus anginosus strain KHUD_S1 NODE_5_length_154944_cov_725.718617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 20673 37 100.0 37 ..................................... CCAAGCACCTTTCCAATATAAACCAACTTCACACAAA 20747 37 100.0 33 ..................................... TCTTTAGAAATCATCTTACGAGCAATACTATTA 20817 37 100.0 35 ..................................... TTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTT 20889 37 100.0 36 ..................................... TGAAAAAGAACGGTAGATTAAACCATTCAGTAACAT 20962 37 100.0 34 ..................................... AAGTCATGTTTTCGATTTTACTTTCTTTTTTTCG 21033 37 100.0 36 ..................................... TTTTGTTCTGACATAATTGTCCTCCTTCTTAATTTG 21106 37 100.0 36 ..................................... TCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAA 21179 37 86.5 0 ..............................TTTTT.. | T [21214] ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 98.3 35 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : ATTCGTTGTTTTGAAACGGAGAATCATGAGGAATTTTTAAGTGGTTATACGACGGGAGAGTAATGATGGGATTTTTTTACAACTTAGATGAGGAGGCGAAAAACTTTGCGCAGAAAAAAACGGTATTTTGTCTTGTTGTCTATGATATCATCAGCAATAAGCGGCGCCTCAAACTTTCTAAATTGTTGGAAGGATATGGTAGGAGAGTCCAACGTTCTTGTTTTGAAATTGATGTTGAAAAAACAAATTATAATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAAACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGACATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATATGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATGGG # Right flank : CATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATGTGAAGAAAGTACAATTGTATTTATCAAACGTTGAAATAAGAGACGATGCTCTAGTATCTAAGTTGCAAGGATTTCTAATGAGCCAGATTTCGGAGGATTTTGTGGATTTTCTTCATGAACAAGAGACAAATCCCTACTCTTTAAATCTATTATCCACGAGAGAAGGAACGATATGGACGGTCAATCTACTTACCCAAGAAGCAGAAGAGAAGATATTGCCTCAGCTTCTGGATTTAGAAGAGATTCAGTTAGATACTTACTCAGGAGCCATATCTGTAAAGAGAATAGAGATTCAGACTTTATCACAAGAGACCTTATTGGAAATTTTTCGGGAGGATGATCCTAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 29916-30594 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCG01000074.1 Streptococcus anginosus strain KHUD_S1 NODE_5_length_154944_cov_725.718617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 29916 37 100.0 37 ..................................... CTTCTTGTTTGTTCATTTTATTCCTCCCACATTTTCA 29990 37 100.0 35 ..................................... TTACAGCATCGTCGTAACAAGTTACAGGTTTTTTT 30062 37 100.0 34 ..................................... CCAGTTGGTTTTAAGTATTGCGATGCATAAACCA 30133 37 100.0 34 ..................................... CATAGCACATCGCAAATAATCATTGTAACGTAAT 30204 37 100.0 34 ..................................... AGATAGAATAGAATAAGCAATCCGCTCTCCTTCA 30275 37 100.0 34 ..................................... GCAAACGGCTTAGGTTGTGAGTATAACTTTCTCG 30346 37 100.0 33 ..................................... TGTCAAGCTTCTACCATCTGCATTTGTGAGTTG 30416 37 100.0 36 ..................................... GCGTCATTTCCATAACGGTCGCCCATGTCATAGTAA 30489 37 100.0 33 ..................................... CCTGGTGTGTGAATCAAAACTTTGTTTGACTTA 30559 36 89.2 0 ..........C....................-A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.9 35 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : CAAGCTAAACCTGTCGCACCCAGATGCCGATGCTATCATTGACTATCTGGAGCATGAGATGAAGAAGGAGCGTGGGAGTGAAAGCAAGGAAAGAGTCTATAACAAGACTTCTACTTTAAACCTTTTGTCTTTTAGCAATATTTTGGAATTTTATCAGGCGGAAGAGTCTTTACTGGAAAGTATCAAATTAGTGAAGAGTTTTAACGGGGAAAGAAATCGTCTAGCACATGGTCTCGCTGAAATCGATAAAAAGGCAATTAGCTCAAAAAGATTGCGCGCCTTGTTGGGAACATTAAAGGATGTCCTCCAGTCCAACTATGATATTAGAGAAGAACGATTCTCCTATTACGATGTTAAGAATGAGGAGTTACTTGAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGG # Right flank : TAGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAGACAAAGGCTATCTATTTTTTGTAAAAAATCCGAAATTTTAGTATAATAAAAAGACTAGAAGTATGAGGTAATGCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAGATCACAATAAAATTAGAAGATTTAGAAGAACATGGAATGGAGATGTCAGATTTTCTTGTTCCGCAAGAAAAGACAGAAGAGTTTTTCTATGCAATTTTAGATGAGTTGGAAATGCCAGAGAGTTTTTTGGATAGCGGTATGCTCAGTTTTCGTGTAACTCCTAAACCAGACCGACTGGACGTGTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGAGGATTTGGCGGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCAGATGAATTTTTAAAGACATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //