Array 1 4129-349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJO01000116.1 Xanthomonas oryzae pv. oryzae strain FuJ XOO_fuj_contig000116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4128 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 4063 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 3999 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 3933 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 3868 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 3801 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 3736 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 3668 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 3602 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 3536 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 3472 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 3407 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 3340 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 3274 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 3208 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 3140 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 3075 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 3009 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 2943 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 2878 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 2812 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 2746 31 96.8 34 .......T....................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 2681 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 2615 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 2549 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 2482 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 2417 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 2351 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 2285 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 2221 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 2155 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 2090 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 2024 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 1959 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 1892 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 1827 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 1760 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 1693 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 1627 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 1560 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1492 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1427 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1362 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1297 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1232 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1166 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1100 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1035 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 970 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 904 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 838 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 774 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 707 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 642 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 576 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 511 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 444 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 379 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 58 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGCCCAATAGTTTAATCGCTCGAGACATTAATGTTAACAGGCCCTAGCATGTCACCAAATCCCGAGCG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8053-9723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJO01000487.1 Xanthomonas oryzae pv. oryzae strain FuJ XOO_fuj_contig000487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8053 31 100.0 35 ............................... ATCTGCTCAAGGCGTCCAGCGGCCAGCTGCTCGTC 8119 31 100.0 35 ............................... CGGCTATCTTTTCCAGTGCCTCAAGCATCCTTGCA 8185 31 100.0 34 ............................... AAGTACACACCAGGTACGCCAGATGAGTTGTCAG 8250 31 100.0 37 ............................... AGCTGACCACAGGTAAGATTGTTGATCTGATCACAGT 8318 31 100.0 34 ............................... TGTCTGGTCCATCTGAAACGGGTTGAAGCCGGTC 8383 31 100.0 35 ............................... TTGGTCTTCCGGTATTCCTCGTGCAGCCAGCGTGG 8449 31 100.0 35 ............................... CCAAAGAGCCGCCCAAGCTGTATCGCCAGACGCAC 8515 31 100.0 35 ............................... TTGTCCAACACCTTGCCGTCGATCGCACGCAGATC 8581 31 100.0 34 ............................... AATCAGCGCGCTGTCGGTACGGCCCGAGCCAATC 8646 31 100.0 33 ............................... CCCCGTTGGGTGTATGCAAACAAGATCAAGCTC 8710 31 100.0 35 ............................... AAGACTTTTTGGTACAGGTGCAGGGCGGCCAAAAC 8776 31 100.0 35 ............................... CACTGGCGACTCAAGCACTTGCAGGAGAGCATGCG 8842 31 100.0 34 ............................... GTTTACTTCTGCGATTTTCGCGGTAGGAAGTATG 8907 31 100.0 35 ............................... CTCAAGATTGCAGATTATCCAGCAGAGGTGCGCCA 8973 31 100.0 35 ............................... AAGGGGTCTGCGACGCAGCAGCTCCAAACGCTGTC 9039 31 100.0 35 ............................... AGAGAGACGAGGCGGAGGCTCGGGCACGTGTGGAT 9105 31 100.0 35 ............................... TGTTCTTTACGGTATTTGTAAATTAACTCCTGCAC 9171 31 100.0 34 ............................... AAGGCACAGCAGGAACGCGCGCGCAAGACCGACC 9236 31 100.0 34 ............................... AAATCGATTGCGACCCGTCTAGCATCGTGCCATG 9301 31 100.0 33 ............................... CTCAAGCAACACCCACTGTGCTGCTACTGTGAA 9365 31 100.0 35 ............................... TGGTCTGCTGCTTCTGCCTTAATGGCAGACAGCCT 9431 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 9496 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 9562 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 9628 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 9693 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 26 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : GTTGAAAACTAGGGTCTGTTAACACATCCGAAGCCCATCAACGACCAGAACGAAGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //