Array 1 201035-203259 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCOD01000018.1 Cronobacter sakazakii strain MOD1-1121-73 MOD1-1121-73_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201035 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 201096 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 201157 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 201218 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 201279 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 201340 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 201401 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 201462 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 201523 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 201584 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 201645 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 201706 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 201767 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 201828 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 201889 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 201950 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 202011 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 202072 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 202133 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 202194 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 202255 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 202316 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 202377 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 202438 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 202499 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 202560 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 202621 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 202682 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 202743 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 202804 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 202865 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 202926 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 202987 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 203048 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 203109 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 203170 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 203231 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229697-230824 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCOD01000018.1 Cronobacter sakazakii strain MOD1-1121-73 MOD1-1121-73_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229697 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 229758 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 229819 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 229880 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 229941 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 230002 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 230063 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 230124 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 230185 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 230246 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 230307 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 230368 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 230429 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 230490 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 230551 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 230612 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 230674 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 230735 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 230796 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //