Array 1 85376-88075 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRXU01000001.1 Bifidobacterium pseudocatenulatum strain AF17-20AC AF17-20AC.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 85376 33 100.0 34 ................................. TTGTAGGCGGTGTCCTGGTCGAGCTTGGTCTTAT 85443 33 100.0 35 ................................. TTGTTGTAGGAGTTCCATTCGTTGAAGAACTCCTG 85511 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 85577 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 85643 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 85709 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 85775 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 85841 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 85907 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 85973 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 86039 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 86105 33 100.0 33 ................................. AGGTAGCCGGTGGAAGCATACTGCACCATGCCC 86171 33 100.0 33 ................................. TGGACACCAGCCATCCCGCATACCCTGCGGCAC 86237 33 100.0 35 ................................. ACTGCCGTTGCTCGTCCAGCCAGCGTGCGAAGCGG 86305 33 100.0 33 ................................. CTTGCCGACGGCGAGGAGCTGCTTGCTTAGTCC 86371 33 100.0 33 ................................. AGCCTGCTTGTCATGCGTAACGGGACGGTGCAG 86437 33 100.0 34 ................................. AGGAAGATCGGCGTGCACGTCACCAATGTGACCA 86504 33 100.0 33 ................................. TTGTCGAAATCCTTCTGCACGTGGGCTGTGATG 86570 33 100.0 34 ................................. TTGGCTTGTGACTGAGCGTGACTTGGCTCAGGCT 86637 33 100.0 34 ................................. ATGAACGAGATGGTATTCAACGTGATTGACGCGA 86704 33 100.0 33 ................................. TTCACCGCGCAGACCGCGCCGTACTAGCCCCGT 86770 33 100.0 35 ................................. TTCCTGGCGTATGGCACCACCCAGCTTCGGCTGCG 86838 33 100.0 34 ................................. AAGTCCATGAGTTCGCCGTTCAGCAGCTTGGTGG 86905 33 100.0 33 ................................. AGTTATGGTTCCCGCCAGCCGACATGGTGAACG 86971 33 100.0 33 ................................. CTCGACAACGCCGAAGAGGATGACATGTCGTAC 87037 33 100.0 37 ................................. GTCACGGAATTTGTTGCGTATGGCGTAGTCCGCATAG 87107 33 100.0 36 ................................. AAACATTCCGAACATGTACGGCATCCGCCTGTGCCC 87176 33 97.0 32 ...G............................. ACCTGTATCAATAGGTAGTCCCTTGCCGTCTG 87241 33 97.0 32 ...G............................. TTGTTATACTGGTAACGTCCACATAAGAGCGA 87306 33 97.0 36 ...G............................. TACATCCGCCTTCACGAGGACGGCAGCGCCAGCCTC 87375 33 97.0 35 ...G............................. TTCGACCTTGACACTAGGGTGCCTGTAGGCGTATT 87443 33 97.0 36 ...G............................. CTCGTAGTGTCCTACAATATGGCCGCCAAGCTGGGC 87512 33 97.0 34 ...G............................. TGCATGTCCTTTAGGACGCTCAGATCAGGCTTGA 87579 33 97.0 33 ...G............................. AGGAACCAGCGTTGGGACGAATATTCCAGCAAG 87645 33 97.0 33 ...G............................. TCGCTCTTCTGGTTGAAGGTGCCGGTGGACTCG 87711 33 97.0 32 ...G............................. CGCACCGATAGGGGTTATATCGCGCATAACGG 87776 33 97.0 33 ...G............................. AAGAACTGGGTAGACATGACGAACGTCTACCAC 87842 33 97.0 34 ...G............................. TCCCACACGGTCTGCTCCACGGCCTTGCCGTACC 87909 33 97.0 34 ...G............................. AAGTTTGGCGAGCTCATACCGGACGGCCTCGCTG 87976 33 97.0 34 ...G............................. TTTTGGACCGTTTGGTCAAGCGAAGCGTGCCCGG 88043 33 81.8 0 .......T..TT.C..A...C............ | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 98.6 34 GTCACTCCCCGCAAGGGGAGTGTGGATTGAAAT # Left flank : GGCGTCTACGTTTAGTGGCAAAAAGCTGCATGAAATATGGGCAACGCGTGCAAAATAGCGTTTTCGAATGTAGCGTTACTTCTGCGGAGTATCTCACGCTTAAGCATGATTTGTTGAGCATTATCGATGTCAAAACGGATAGTTTGAGATATTACAATTTGGGAACGAACTATTCACGGCGCATTGAACACTTAGGCGTTCAACGTCATGTTCCCGTTGATGGAGTCATGATGGTATGACTTCTAAACGACATGCAGTGCGACCCTGAAGCAGTCATGAGTTACAGGTAGGTTCGCACCTTTTTTGTGCGGAGGAAATTAAAACTGGAACCCTGATGTAATTTCGGATTGTTGTTTGATAATCGAAAAGTGTAGTCAGATAGAGTTTGATCTTTGCATTTGGACGTATTTGGGGCGGCGGGGAACTGATGTAATATGTGTATCAGCCGAGATGAGGTTTTGCTTGAATCATTATTTGGTCAAAAATGTCTCATTTCTGCG # Right flank : TCGGTGTCTGCGGCGTTCCGGCCACCGCGTGGATGTCGCTCTCCCTGTTTATGTCCAGTGTTCTCCGTACATGCGGGGATGATTCCGCATGTACGGGACTGTTAGTATCAATGACAATCCGAGGGGGTGAAAACGAGTTTATGGGCACGCGTGCGGAGTCTCAGATGCGCAGGACTCCTCACGCAGCGCATATCACAATCCTAGCCAAGCACGTAGGTCATGAATTTCCTGATCGCAGATGCCATGAGCCATTCCTAGATATTCGAAGTAGGTGAGATTGCCGGTTTGCGCGAGTTTGTTGCGCGCACACTGTTGGTCGGATAGTGGAATTGTGCGGTCTTCGCTGCCGTAACAGAGTGCGAATCGCGTGCGTCCGGTCGCGGGCAAGGGCTCAGCGGTTTCACCTTTGAATGACGGACTCATCAAAATCGCCATATCGAACACATCGGGATGTTCCGCAACCATGCGATACGATAGGTATCCGTCTTGCGAAAACCCAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCAAGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //